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Job DescriptionQ46939
Confidence100.00%DateThu Jan 5 12:35:58 GMT 2012
Rank22Aligned Residues295
% Identity22%Templatec2gqdB_
PDB info PDB header:transferaseChain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 2; PDBTitle: the crystal structure of b-ketoacyl-acp synthase ii (fabf)2 from staphylococcus aureus
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10 ..... ....20........ .30.....
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Query Sequence  KDVVIVGAL. RTPIG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CFRGALAGHSAVE. . . . . . . . . . . . . . . LGSLVVK
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Template Sequence  KRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQYAIVAAR
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BTTBSSTT




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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   36...40......... 50..... ....60.........70.........80.....
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Query Sequence  ALIERTGVPAYAVD. . . . EVILGQ. . . . . . . . . . . . . . . . . . . . . . . . . . VLTAGAGQNPARQSAIKGGLPNSVSAITIN
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Template Sequence  EAVKDAQLDINENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKG. . PNGATV
Template Known Secondary structure  T


STTTGGG
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T
GGGS
TTSTTT

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   85....90.........100.........110.........120.........130.........140.........150...... ...160..
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  DVCGSGLKALHLATQAIQCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVTAENLA
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Template Sequence  TACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIET. . . . . . . . . . . . . . . . . . . . . . . .
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GGGTTS
S


STT
B




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   163......170.........180.........190.........200.........210........
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  REYGISRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMTQSNGQTLVVDTDEQPRTDASAEGLARLNPSFDSLGSVTAGN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ACRPFQEGRD
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TTBTT

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   219220........
 
   246...250.........260.........270.........280... ......290.........300.........310.........320
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Query Sequence  ASSINDGAAAVMMMSEAKARALNLPVLARIRAFASVGV. . . . . DPALMGIAPVYATRRCLERVGWQLAEVDLIEANEAFA
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Template Sequence  GFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTST
Template Known Secondary structure  SB
BB
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S
SSS

GGGT

GGG





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   229230.........240.........250.........260.........270.........280.........290.........300........
 
   321........330.........340..... ....350.........360.......
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Query Sequence  . . . . . AQALSVGKMLEWDERRVNVNGGAIA. LGHPIGASGCRILVSLVHEMVK. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  PVGDLNEVKAIKNTFGEAAKHL. KVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIVPNEAQD
Template Known Secondary structure  GGGGGGS.
T
B
TTTTT

BTT

SB
TT

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BSS
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   309310.........320.........330 .........340.........350.........360.........370.........380.......
 
   368.370.........380.........390...
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Query Sequence  RNARKGLATLCIGGGQGVALTIERDE
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Template Sequence  LDITYAMSNSLGFGGHNAVLVFKKFE
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STTT


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   388.390.........400.........410...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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