Job Description Q46939 Confidence 100.00% Date Thu Jan 5 12:35:58 GMT 2012 Rank 9 Aligned Residues 375 % Identity 41% Template c2c7yB_ PDB info PDB header:transferase Chain: B: PDB Molecule:3-ketoacyl-coa thiolase 2; PDBTitle: plant enzyme Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.																																																	.
Query SS confidence																	.																																																	.
Query Sequence		M	K	D	V	V	I	V	G	A	L	R	T	P	I	G	.	C	F	R	G	A	L	A	G	H	S	A	V	E	L	G	S	L	V	V	K	A	L	I	E	R	T	G	V	P	A	Y	A	V	D	E	V	I	L	G	Q	V	L	T	A	G	A	G	Q	.	N	P	A	R	Q	S	A	I	K	G	G	L	P	N	S
Query Conservation																	.																																																	.
Alig confidence																	.																																																	.
Template Conservation
Template Sequence		G	D	D	V	V	I	V	A	A	H	R	T	P	L	C	K	S	K	R	G	N	F	K	D	T	Y	P	D	D	L	L	A	P	V	L	R	A	L	I	E	K	T	N	L	N	P	S	E	V	G	D	I	V	V	G	T	V	L	A	P	G	S	Q	R	A	S	E	C	R	M	A	A	F	Y	A	G	F	P	E	T
Template Known Secondary structure		T	T	T														T	T	T		T	T	T	T			T																T			G	G	G										S	S		T	T													T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	A	I	T	I	N	D	V	C	G	S	G	L	K	A	L	H	L	A	T	Q	A	I	Q	C	G	E	A	D	I	V	I	A	G	G	Q	E	N	M	S	R	A	P	H	V	L	T	D	S	R	T	G	A	Q	L	G	N	S	Q	L	V	D	S	L	V	H	D	G	L	W	D	A	F	N	D	Y	H	I	G
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	V	R	T	V	N	R	Q	C	S	S	G	L	Q	A	V	A	D	V	A	A	A	I	K	A	G	F	Y	D	I	G	I	G	A	G	L	E	S	M	T	T	N	P	M	A	W	E	K	K	F	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	N	C	L	L	P	M	G
Template Known Secondary structure		S								S	S			S													T	T	S		S										S				S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.																			.	.	.	.	.	.	.	.	190
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.							.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.
Query Sequence		V	T	A	E	N	L	A	R	E	Y	G	I	S	R	Q	L	Q	D	A	Y	A	L	S	S	Q	Q	K	A	R	A	A	I	D	A	G	R	F	K	D	E	I	V	P	V	M	T	Q	.	.	.	.	.	.	S	N	G	Q	T	L	V	V	D	T	D	E	Q	P	R	T	D	A	S	A	E	G	L	A	R	L	N
Query Conservation																																																	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.
Template Conservation
Template Sequence		V	T	S	E	N	V	A	Q	R	F	G	V	S	R	Q	E	Q	D	Q	A	A	V	D	S	H	R	K	A	A	A	A	T	A	A	G	K	F	K	D	E	I	I	P	V	K	T	K	L	V	D	P	K	T	G	D	E	K	P	I	T	V	S	V	D	D	G	I	R	P	T	T	T	L	A	S	L	G	K	L	K
Template Known Secondary structure											T	T																							T	T	T	T	T	T	T	B										T	T	T										S		T	T			T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	F	D	S	L	G	S	V	T	A	G	N	A	S	S	I	N	D	G	A	A	A	V	M	M	M	S	E	A	K	A	R	A	L	N	L	P	V	L	A	R	I	R	A	F	A	S	V	G	V	D	P	A	L	M	G	I	A	P	V	Y	A	T	R	R	C	L	E	R	V	G	W	Q	L	A	E	V	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	F	K	K	D	G	T	T	T	A	G	N	S	S	Q	V	S	D	G	A	G	A	V	L	L	M	K	R	S	V	A	M	Q	K	G	L	P	V	L	G	V	F	R	T	F	A	A	V	G	V	D	P	A	I	M	G	I	G	P	A	V	A	I	P	A	A	V	K	A	A	G	L	E	L	D	D	I	D	L
Template Known Secondary structure		B	S	S	S	T	T		S		B	S	S	S	B			B																			T																	T	T	S	T	T														T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		I	E	A	N	E	A	F	A	A	Q	A	L	S	V	G	K	M	L	E	W	D	E	R	R	V	N	V	N	G	G	A	I	A	L	G	H	P	I	G	A	S	G	C	R	I	L	V	S	L	V	H	E	M	V	K	.	.	R	N	A	R	K	G	L	A	T	L	C	I	G	G	G	Q	G	V	A	L	T	I	E
Query Conservation																																																									.	.
Alig confidence																																																									.	.
Template Conservation
Template Sequence		F	E	I	N	E	A	F	A	S	Q	F	V	Y	C	R	N	K	L	G	L	D	P	E	K	I	N	V	N	G	G	A	M	A	I	G	H	P	L	G	A	T	G	A	R	C	V	A	T	L	L	H	E	M	K	R	R	G	K	D	C	R	F	G	V	V	S	M	C	I	G	T	G	M	G	A	A	A	V	F	E
Template Known Secondary structure							S	B												T			G	G	G	B	S	T	T								B		G	G	G																		T	T										S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		391	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		438	.	440

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions