Job Description Q46939 Confidence 100.00% Date Thu Jan 5 12:35:58 GMT 2012 Rank 7 Aligned Residues 379 % Identity 37% Template c1afwB_ PDB info PDB header:thiolase Chain: B: PDB Molecule:3-ketoacetyl-coa thiolase; PDBTitle: the 1.8 angstrom crystal structure of the dimeric2 peroxisomal thiolase of saccharomyces cerevisiae Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																		.																								.	.	.	.
Query SS confidence																		.																								.	.	.	.
Query Sequence		M	K	D	V	V	I	V	G	A	L	R	T	P	I	G	C	.	F	R	G	A	L	A	G	H	S	A	V	E	L	G	S	L	V	V	K	A	L	I	E	.	.	.	.	R	T	G	V	P	A	Y	A	V	D	E	V	I	L	G	Q	V	L	T	A	G	A	G	Q	N	P	A	R	Q	S	A	I	K	G	G	L
Query Conservation																		.																								.	.	.	.
Alig confidence																		.																								.	.	.	.
Template Conservation
Template Sequence		P	E	D	V	V	I	V	A	A	N	R	S	A	I	G	K	G	F	K	G	A	F	K	D	V	N	T	D	Y	L	L	Y	N	F	L	N	E	F	I	G	R	F	P	E	P	L	R	A	D	L	N	L	I	E	E	V	A	C	G	N	V	L	N	V	G	A	G	A	T	E	H	R	A	A	C	L	A	S	G	I
Template Known Secondary structure		T	T															T	T	T	S	T	T	T	T																	T	S								G	G	G									S	S	S	G	G	G	G											T	T
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	S	V	S	A	I	T	I	N	D	V	C	G	S	G	L	K	A	L	H	L	A	T	Q	A	I	Q	C	G	E	A	D	I	V	I	A	G	G	Q	E	N	M	S	R	A	P	H	V	L	T	D	S	R	T	G	A	Q	L	G	N	S	Q	L	V	D	S	L	V	H	D	G	L	W	D	A	F	N	D	Y
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.
Template Sequence		P	Y	S	T	P	F	V	A	L	N	R	Q	C	S	S	G	L	T	A	V	N	D	I	A	N	K	I	K	V	G	Q	I	D	I	G	L	A	L	G	V	E	S	M	T	N	N	Y	K	N	V	N	P	L	G	M	I	S	.	.	.	.	.	.	.	.	S	E	E	L	Q	K	N	R	E	A	K	K	C	L	I
Template Known Secondary structure			T	T	S								G	G	G															T	T	S		S														G	G	G	S		T	T		S			.	.	.	.	.	.	.	.								T	T	G	G	G	G	G	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.									170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	G	V	T	A	E	N	L	A	R	E	Y	G	I	S	R	Q	L	Q	D	A	Y	A	L	S	S	Q	Q	K	A	R	A	A	I	D	A	G	R	F	K	D	E	I	V	P	V	M	T	Q	S	N	G	Q	T	L	V	V	D	T	D	E	Q	P	R	T	D	A	S	A	E	G	L	A	R	L	N	P	S	F
Query Conservation
Alig confidence																																																							.	.	.
Template Conservation																																																							.	.	.
Template Sequence		P	M	G	I	T	N	E	N	V	A	A	N	F	K	I	S	R	K	D	Q	D	E	F	A	A	N	S	Y	Q	K	A	Y	K	A	K	N	E	G	L	F	E	D	E	I	L	P	I	K	L	P	D	G	S	.	.	.	I	C	Q	S	D	E	G	P	R	P	N	V	T	A	E	S	L	S	S	I	R	P	A	F
Template Known Secondary structure														T	T																							T	T	T	T	T	T	T	B						T	T	S		.	.	.				S		S				T	T							T	T				S	S
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		236	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		D	S	.	L	G	S	V	T	A	G	N	A	S	S	I	N	D	G	A	A	A	V	M	M	M	S	E	A	K	A	R	A	L	N	L	P	V	L	A	R	I	R	A	F	A	S	V	G	V	D	P	A	L	M	G	I	A	P	V	Y	A	T	R	R	C	L	E	R	V	G	W	Q	L	A	E	V	D	L	I	E
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		I	K	D	R	G	T	T	T	A	G	N	A	S	Q	V	S	D	G	V	A	G	V	L	L	A	R	R	S	V	A	N	Q	L	N	L	P	V	L	G	R	Y	I	D	F	Q	T	V	G	V	P	P	E	I	M	G	V	G	P	A	Y	A	I	P	K	V	L	E	A	T	G	L	Q	V	Q	D	I	D	I	F	E
Template Known Secondary structure		S	T	T	T					T	T	S	B																						T				S													G	G	G	G	G	G														T			G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	E	A	F	A	A	Q	A	L	S	V	G	K	M	L	E	W	D	E	R	R	V	N	V	N	G	G	A	I	A	L	G	H	P	I	G	A	S	G	C	R	I	L	V	S	L	V	H	E	M	V	K	R	N	A	R	K	G	L	A	T	L	C	I	G	G	G	Q	G	V	A	L	T	I	E	R	D
Query Conservation
Alig confidence																																																								.	.
Template Conservation																																																								.	.
Template Sequence		I	N	E	A	F	A	A	Q	A	L	Y	C	I	H	K	L	G	I	D	L	N	K	V	N	P	R	G	G	A	I	A	L	G	H	P	L	G	C	T	G	A	R	Q	V	A	T	I	L	R	E	L	K	K	D	.	.	Q	I	G	V	V	S	M	C	I	G	T	G	M	G	A	A	A	I	F	I	K	E
Template Known Secondary structure					S	B												T			G	G	G	B	S	T	T										T	T	T													S		T	T	.	.										T	T	T
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.			.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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