Job Description P23841 Confidence 39.54% Date Thu Jan 5 11:39:47 GMT 2012 Rank 328 Aligned Residues 194 % Identity 11% Template d1amfa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.75

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		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.										.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.
Query Sequence		G	R	I	E	L	G	V	V	G	T	A	M	W	G	R	M	R	P	V	M	R	R	F	L	R	E	N	P	N	V	D	V	L	F	R	E	K	M	P	A	M	Q	M	A	L	L	E	R	R	E	L	D	A	G	I	W	R	.	.	.	.	.	.	.	.	.	M	A	T	E	P	P	T	G	F	T	S	L	R	L
Query Conservation																																																											.	.	.	.	.	.	.	.	.
Alig confidence																	.								.																																		.	.	.	.	.	.	.	.	.
Template Conservation																	.								.
Template Sequence		G	K	I	T	V	F	A	A	A	S	L	T	N	A	M	.	Q	D	I	A	T	Q	F	.	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	T	L
Template Known Secondary structure										G	G	G					.								.																									T				S					S	S										T	T		B		G	G	G
Template Predicted Secondary structure																	.								.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.						.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.																									.	.	.	.
Query SS confidence																														.	.	.	.	.																									.	.	.	.
Query Sequence		H	E	S	A	F	L	V	A	M	P	E	E	H	H	L	S	S	F	S	T	V	P	L	E	A	L	R	D	.	.	.	.	.	E	Y	F	V	T	M	P	P	V	Y	T	D	W	D	F	L	Q	R	V	C	Q	Q	V	G	.	.	.	.	F	S	P	V	V	I	R	E	V	N	E	P	Q	T	V	L	A	M	V
Query Conservation																														.	.	.	.	.																									.	.	.	.
Alig confidence																														.	.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence		L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E
Template Known Secondary structure												T	T									S	T	T								T	T								T	T	T														T	T						G	G	G					S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		S	M	G	I	G	I	T	L	I	A	D	S	Y	A	Q	M	N	W	P	G	V	I	F	R	P	L	K	Q	.	.	R	I	P	A	D	L	Y	I	V	Y	E	T	Q	Q	V	T	P	A	M	V	K	L	L	A	A	L
Query Conservation																														.	.
Alig confidence																														.	.
Template Conservation
Template Sequence		R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	V	K	A	F	Y	D	Y	L
Template Known Secondary structure		T	T	S	S	S													S	S									G	G	G	S										B	T	T			S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions