Job Description P23841 Confidence 99.62% Date Thu Jan 5 11:39:47 GMT 2012 Rank 29 Aligned Residues 199 % Identity 16% Template c3oxnD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus Resolution 2.70 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	E	A	G	R	I	E	L	G	V	V	G	T	A	M	W	G	R	M	R	P	V	M	R	R	F	L	R	E	N	P	N	V	D	V	L	F	R	E	K	M	P	A	M	Q	M	A	L	L	E	R	R	E	L	D	A	G	I	W	R	M	A	T	E	P	P	T	G	F	T	S	L	R	L	H	E	S	A	F
Query Conservation
Alig confidence																																																																						.
Template Conservation																																																																						.
Template Sequence		Q	Q	C	D	Q	T	F	T	I	A	T	T	D	Y	A	X	Q	T	I	L	P	F	A	L	P	R	I	Y	Q	E	A	P	N	V	S	F	N	F	L	P	L	Q	H	D	R	L	S	D	Q	L	T	Y	E	G	A	D	L	A	I	C	R	P	T	G	P	V	E	P	.	L	R	S	E	I	L	G	R	V	G	V
Template Known Secondary structure			S																T														T	T										G	G	G							T	S			S							S	S			T	T	.	S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	A	M	P	E	E	H	H	L	S	S	F	S	T	V	P	L	E	A	L	R	D	E	Y	F	V	T	M	P	P	V	Y	T	D	W	D	F	L	Q	R	V	C	Q	Q	V	G	F	S	P	V	V	I	R	E	V	N	E	P	Q	T	V	L	A	M	V	S	M	G	I	G	I	T	L	I	A	D	S	Y	A
Query Conservation
Alig confidence																.																																						.
Template Conservation																.																																						.
Template Sequence		L	C	L	L	S	K	Q	H	P	L	A	N	Q	E	.	X	S	L	D	D	Y	L	S	H	P	H	A	X	I	A	I	S	D	G	V	K	A	L	I	E	Q	A	L	I	D	K	P	Q	R	K	X	V	.	L	R	A	Y	H	L	E	A	A	L	A	I	V	D	T	L	P	I	I	I	T	V	P	A	D	L	A
Template Known Secondary structure							T	T	S	G	G	G	S	S		.									S						S													T	S	S	S							.				S										T	T	S
Template Predicted Secondary structure																.																																						.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		253	.	.	.			.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure						.	.											.														.
Query SS confidence						.	.											.														.
Query Sequence		Q	M	N	W	.	.	P	G	V	I	F	R	P	L	K	Q	.	R	I	P	A	D	L	Y	I	V	Y	E	T	Q	.	Q	V	T	P	A	M	V	K	L	L	A	A	L	T	Q
Query Conservation						.	.											.														.
Alig confidence						.	.											.														.
Template Conservation
Template Sequence		Y	L	V	A	E	R	Y	D	L	V	V	K	P	L	P	F	Q	F	T	P	F	D	Y	S	X	I	W	H	A	R	C	E	H	S	P	A	Q	E	W	L	R	S	V	V	R	E
Template Known Secondary structure									T							S	S													G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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