Job Description P23841 Confidence 99.48% Date Thu Jan 5 11:39:47 GMT 2012 Rank 34 Aligned Residues 192 % Identity 15% Template c3kosA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii Resolution 1.83 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	R	I	E	L	G	V	V	G	T	A	M	W	G	R	M	R	P	V	M	R	R	F	L	R	E	N	P	N	V	D	V	L	F	R	E	K	M	P	A	M	Q	M	A	L	L	E	R	R	E	L	D	A	G	I	W	R	M	A	T	E	P	P	T	G	F	T	S	L	R	L	H	E	S	A	F	L	V	A
Query Conservation
Alig confidence																																																.	.	.
Template Conservation																																																.	.	.
Template Sequence		Q	E	K	L	K	I	G	V	V	G	T	F	A	I	G	C	L	F	P	L	L	S	D	F	K	R	S	Y	P	H	I	D	L	H	I	S	T	H	N	N	R	V	D	P	A	A	.	.	.	E	G	L	D	Y	T	I	R	Y	G	G	G	A	W	H	D	T	D	A	Q	Y	L	C	S	A	L	X	S	P	L	C
Template Known Secondary structure																	T													T	T										S							.	.	.		T		S								S			T	T															B
Template Predicted Secondary structure																																																.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	E	E	H	H	L	S	S	F	S	T	V	P	L	E	A	L	R	D	E	Y	F	V	T	M	P	P	V	Y	T	D	W	D	F	L	Q	R	V	C	Q	Q	V	G	F	S	P	V	V	I	R	E	V	N	E	P	Q	T	V	L	A	M	V	S	M	G	I	G	I	T	L	I	A	D	S	Y	A	Q	M	N
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	S	P	T	L	A	S	Q	I	Q	T	P	A	D	I	L	K	F	P	L	L	R	S	Y	R	R	D	E	W	A	L	W	X	Q	T	V	G	E	A	P	P	S	P	T	H	N	V	X	V	F	D	S	S	V	T	X	L	E	A	A	Q	A	G	X	G	V	A	I	A	P	V	R	X	F	T	H	L
Template Known Secondary structure		.	.	.	.						T	T		S	S	G	G	G	G	G	G	S						S		T	T									T	T						T	T	S						S											T	T	S		B					G	G	G
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure													.	.														.
Query SS confidence													.	.														.
Query Sequence		W	P	G	V	I	F	R	P	L	K	Q	.	.	R	I	P	A	D	L	Y	I	V	Y	E	T	Q	.	Q	V	T	P	A	M	V	K	L	L	A	A	L	T	Q
Query Conservation													.	.														.
Alig confidence													.	.														.
Template Conservation
Template Sequence		L	S	S	E	R	I	V	Q	P	F	L	T	Q	I	D	L	G	S	Y	W	I	T	R	L	Q	S	R	P	E	T	P	A	X	R	E	F	S	R	W	L	T	G
Template Known Secondary structure				T	T	S	S	B							B		S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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