Job Description P08192 Confidence 100.00% Date Thu Jan 5 11:00:51 GMT 2012 Rank 12 Aligned Residues 332 % Identity 22% Template c3uagA_ PDB info PDB header:ligase Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d- PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase Resolution 1.77 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	K	R	T	P	Q	A	A	S	P	L	A	S	W	L	S	Y	L	E	N	L	H	S	K	T	I	D	L	G	L	E	R	V	S	L	V	A	A	R	L	G	V	L	K	P	A	P	F	V	F	T	V	A	G	T	N	G	K	G	T	T	C	R	T	L	E	S	I	L	M	A	A	G	Y	K	V	G	V	Y
Query Conservation
Alig confidence																.															.	.	.	.	.								.	.	.	.
Template Conservation																.															.	.	.	.	.								.	.	.	.
Template Sequence		L	I	V	A	S	P	G	I	A	L	A	H	P	S	.	L	S	A	A	A	D	A	G	I	E	I	V	G	D	.	.	.	.	.	I	E	L	F	C	R	E	.	.	.	.	A	Q	A	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A	A	G	V	N	V	G	V	G
Template Known Secondary structure							T	T	S		T	T	S			.							T	T							.	.	.	.	.								.	.	.	.			S								S	S																T	T
Template Predicted Secondary structure																.															.	.	.	.	.								.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.						.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	P	H	L	V	R	Y	T	E	R	V	R	V	Q	G	Q	E	L	P	E	S	A	H	T	A	S	F	A	E	I	E	S	A	R	G	D	I	S	L	T	Y	F	E	Y	G	T	L	S	A	L	W	L	F	K	Q	A	Q	L	D	V	V	I	L	E	V	G	L	G	G	R	L	D	A	T	N	I	V	D	A
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		G	N	I	G	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	M	L	L	D	D	E	C	E	L	Y	V	L	E	L	S	S	F	Q	L	.	E	T	T	S	S	L	Q	A
Template Known Secondary structure			T	T	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G			T	T														.		T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		137	.	.	140	.	.																																													.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	A	V	V	T	S	I	A	L	D	H	T	D	W	L	G	P	D	R	E	S	I	G	R	E	K	A	G	I	F	R	S	E	K	P	A	I	V	G	E	P	E	M	P	S	T	I	A	D	V	A	Q	E	K	G	A	L	L	Q	R	R	G	V	E	W	N	Y	S	V	T	D	H	D	W	A	F	S	D	A
Query Conservation
Alig confidence																			.																											.	.	.	.	.	.
Template Conservation																			.																											.	.	.	.	.	.
Template Sequence		V	A	A	T	I	L	N	V	T	E	D	H	M	D	R	Y	P	.	F	G	L	Q	Q	Y	R	A	A	L	R	I	Y	E	N	A	K	V	C	V	V	N	A	D	D	A	.	.	.	.	.	.	L	T	M	P	I	E	R	C	V	S	F	G	V	N	M	G	D	Y	H	L	N	H	E	T	W	L	R	V	K	G
Template Known Secondary structure		S									S			G	G	G		T	.	T										G	G	G	T	T		S						T	T		G	.	.	.	.	.	.	G	G											S	S	S	S	S												T	T
Template Predicted Secondary structure																			.																											.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																															.																.									.											.	.
Query SS confidence																															.																.									.											.	.
Query Sequence		H	G	T	L	E	N	L	P	L	P	L	V	P	Q	P	N	A	A	T	A	L	A	A	L	R	A	S	G	L	.	E	V	S	E	N	A	I	R	D	G	I	A	S	A	I	.	L	P	G	R	F	Q	I	V	.	S	E	S	P	R	V	I	F	D	V	.	.	A	H	N	P	H	A	A	E	Y	L	T	G	R
Query Conservation																															.																.									.											.	.
Alig confidence																															.																.									.											.	.											.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		E	K	V	L	N	V	K	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L	P	R	A	S	S	L	K	A	L	T	T	F	T	G	L	P	H	R	F	E	V	V	L	E	H	N	G	V	R	W	I	N	D	S	K	A	T	N	V	G	S	T	E	A	A	.	.	.
Template Known Secondary structure							G	G	G		S			S																	T	T																	T	T	S	S							T	T							T	T			S								.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																			.																																									.
Query SS confidence																			.																																									.
Query Sequence		M	K	A	L	P	K	N	G	R	V	L	A	V	I	G	M	L	.	H	D	K	D	I	A	G	T	L	A	W	L	K	S	V	V	D	D	W	Y	C	A	P	L	E	G	P	R	G	A	T	A	E	Q	L	L	E	H	L	G	.	N	G	K	S	F	D	S	V	A	Q	A	W	D	A	A	M	A	D	A	K	A
Query Conservation																			.																																									.
Alig confidence																			.																											.	.	.	.	.	.									.
Template Conservation																																														.	.	.	.	.	.
Template Sequence		L	N	G	L	H	V	D	G	T	L	H	L	L	L	G	G	D	G	K	S	A	D	F	S	P	L	A	R	Y	L	N	G	D	N	V	R	L	Y	C	F	G	R	D	G	.	.	.	.	.	.	A	Q	L	A	A	L	R	P	E	V	A	E	Q	T	E	T	M	E	Q	A	M	R	L	L	A	P	R	V	Q	P
Template Known Secondary structure			T	T				S	S								S	B		T	T				G	G	G	G	G	G	S		S	T	T							S	T	T		.	.	.	.	.	.					T	T	S	G	G	G					S	S									G	G	G			T
Template Predicted Secondary structure																																														.	.	.	.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.							.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		395	.	.	.	.	400				.	.	.	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		E	D	T	V	L	V	.	.	.	C	G	S	F
Query Conservation								.	.	.
Alig confidence								.	.	.
Template Conservation
Template Sequence		G	D	M	V	L	L	S	P	A	C	A	S	L
Template Known Secondary structure		T								S	S	B	S	T
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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