Job Description P08192 Confidence 99.65% Date Thu Jan 5 11:00:51 GMT 2012 Rank 28 Aligned Residues 114 % Identity 24% Template c3mvnA_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamayl-medo- PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamayl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		289	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		R	F	Q	I	V	.	.	S	E	S	P	R	V	I	F	D	V	A	H	N	P	H	A	A	E	Y	L	T	G	R	M	K	A	L	P	K	N	G	R	V	L	A	V	I	G	M	L	H	D	K	D	I	A	G	T	L	A	W	L	K	S	V	V	D	D	W	Y	C	A	P	L	E	G	P	R	G	A	T	A	E
Query Conservation							.	.
Alig confidence							.	.																																							.	.	.	.	.																								.	.	.	.
Template Conservation																																															.	.	.	.	.																								.	.	.	.
Template Sequence		R	L	E	V	K	G	V	V	N	N	I	T	V	Y	D	D	F	A	H	H	P	T	A	I	T	A	T	I	D	A	L	R	A	K	V	G	Q	Q	R	I	L	A	V	L	E	.	.	.	.	.	P	R	K	H	E	L	A	T	S	L	Q	D	A	D	S	V	F	I	Y	Q	P	W	Q	.	.	.	.	V	S	E
Template Known Secondary structure										T	T										S																T	T	S								.	.	.	.	.											T	T		S										.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.																								.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.						.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.					.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.			.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		Q	L	L	E	H	L	G	N	G	K	S	F	D	S	V	A	Q	A	W	D	A	A	M	A	D	A	K	A	E	D	T	V	L	V	C	.	.	G	S	F	H	T	V	A	H	V	M
Query Conservation																																					.	.
Alig confidence																																					.	.
Template Conservation
Template Sequence		V	L	A	N	L	A	Q	P	A	I	S	A	D	D	V	D	E	L	V	X	R	I	V	Q	Q	A	K	P	N	D	H	I	L	I	X	S	N	G	A	F	G	G	I	H	Q	K	L
Template Known Secondary structure				T	T			S						S	S														T	T								S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions