Job Description P08192 Confidence 100.00% Date Thu Jan 5 11:00:51 GMT 2012 Rank 13 Aligned Residues 346 % Identity 14% Template c3lk7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase; PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a Resolution 1.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	K	R	T	P	Q	A	A	S	P	L	A	S	W	L	S	Y	L	E	N	L	H	S	K	T	I	D	L	G	L	E	R	V	S	L	V	A	A	R	L	G	V	L	K	P	A	P	F	V	F	T	V	A	G	T	N	G	K	G	T	T	C	R	T	L	E	S	I	L	M	A	A	G	Y	K	V	G	V	Y
Query Conservation
Alig confidence																.															.	.	.	.	.								.	.	.	.
Template Conservation																.															.	.	.	.	.								.	.	.	.
Template Sequence		Y	X	I	K	N	P	G	I	P	Y	N	N	P	X	.	V	K	K	A	L	E	K	Q	I	P	V	L	T	E	.	.	.	.	.	V	E	L	A	Y	L	V	.	.	.	.	S	E	S	Q	L	I	G	I	T	G	S	N	G	K	T	T	T	T	T	X	I	A	E	V	L	N	A	G	G	Q	R	G	L	L	A
Template Known Secondary structure							T	T	S		T	T	S			.							T	T							.	.	.	.	.								.	.	.	.			S								S	S																T	T
Template Predicted Secondary structure																.															.	.	.	.	.								.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	P	H	L	V	R	Y	T	E	R	V	R	V	Q	G	Q	E	L	P	E	S	A	H	T	A	S	F	A	E	I	E	S	A	R	G	D	I	S	L	T	Y	F	E	Y	G	T	L	S	A	L	W	L	F	K	Q	A	Q	L	D	V	V	I	L	E	V	G	L	G	G	R	L	D	A	T	N	I	V	D	A
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	F	P	A	S	E	V	V	Q	A	A	N	D	K	D	T	L	V	X	E	L	S	S	F	Q	L	.	X	G	V	K	E	F	R	P
Template Known Secondary structure			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S						T	T	T			T	T													.	T	T		S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		145	.																																											.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		D	V	A	V	V	T	S	I	A	L	D	H	T	D	W	L	G	P	D	R	E	S	I	G	R	E	K	A	G	I	F	.	.	.	R	S	E	K	P	A	I	V	G	E	P	E	M	P	S	T	I	A	D	V	A	Q	E	K	G	A	L	L	Q	R	R	G	V	E	W	N	Y	S	V	T	D	H	D	W	A	F
Query Conservation																																	.	.	.
Alig confidence																			.														.	.	.
Template Conservation																			.
Template Sequence		H	I	A	V	I	T	N	L	X	P	T	H	L	D	Y	H	G	.	S	F	E	D	Y	V	A	A	K	W	N	I	Q	N	Q	X	S	S	S	D	F	L	V	L	N	F	N	Q	G	I	S	K	E	L	A	K	T	T	K	A	T	I	V	P	F	S	T	T	E	K	V	D	G	A	Y	V	Q	D	K	Q	L	F
Template Known Secondary structure		S									S							S	.	S										G	G	G	T	T			T	T	S						T	T	S								T	T		S	S							S	S	S			S	S					T	T
Template Predicted Secondary structure																			.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																		.																.
Query SS confidence																																		.																.
Query Sequence		S	D	A	H	G	T	L	E	N	L	P	L	P	L	V	P	Q	P	N	A	A	T	A	L	A	A	L	R	A	S	G	L	.	E	V	S	E	N	A	I	R	D	G	I	A	S	A	I	.	L	P	G	R	F	Q	I	V	S	E	S	P	R	V	I	F	D	V	A	H	N	P	H	A	A	E	Y	L	T	G	R
Query Conservation																																		.																.
Alig confidence																																		.																.
Template Conservation
Template Sequence		Y	K	G	E	N	I	X	S	V	D	D	I	G	V	P	G	S	H	N	V	E	N	A	L	A	T	I	A	V	A	K	L	A	G	I	S	N	Q	V	I	R	E	T	L	S	N	F	G	G	V	K	H	R	L	Q	S	L	G	K	V	H	G	I	S	F	Y	N	D	S	K	S	T	N	I	L	A	T	Q	K	A
Template Known Secondary structure			T	T						G	G	G	S	S	S		S																		T																	T	T	S	S							T	T							T	T			S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	A	L	P	K	N	G	R	V	L	A	V	I	G	M	L	H	D	K	D	I	A	G	T	L	A	W	L	K	S	V	V	D	D	W	Y	C	A	P	L	E	G	P	R	G	A	T	A	E	Q	L	L	E	H	L	G	N	G	K	S	F	D	S	V	A	Q	A	W	D	A	A	M	A	D	A	K	A	E	D
Query Conservation
Alig confidence																																	.																.	.
Template Conservation																																	.																.	.
Template Sequence		L	S	G	F	D	N	T	K	V	I	L	I	A	G	G	L	D	R	G	N	E	F	D	E	L	I	P	D	I	T	G	.	L	K	H	X	V	V	L	G	E	S	A	S	R	V	K	.	.	R	A	A	Q	K	A	G	V	T	Y	S	D	A	L	D	V	R	D	A	V	H	K	A	Y	E	V	A	Q	Q	G	D
Template Known Secondary structure				T	S		G	G	G								S			S				G	G	G					T	T	.		S						S	T	T						.	.						T	T							S	S														T	T
Template Predicted Secondary structure																																	.																.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.			.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		397	.	.	400				.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		T	V	L	V	.	.	.	C	G	S	F
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		V	I	L	L	S	P	A	N	A	S	W
Template Known Secondary structure								S	S		S	T
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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