Job Description P08192 Confidence 100.00% Date Thu Jan 5 11:00:51 GMT 2012 Rank 11 Aligned Residues 381 % Identity 16% Template c3hn7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution Resolution 1.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	K	R	T	P	Q	A	A	S	P	L	A	S	W	L	S	Y	L	E	N	L	H	S	K	T	I	D	L	G	L	E	R	V	S	L	V	A	A	R	L	G	V	L	K	P	A	P	F	V	F	T	V	A	G	T	N	G	K	G	T	T	C	R	T	L	E	S	I	L	M	A	A	G	Y	K	V	G	V	Y
Query Conservation
Alig confidence																.	.	.	.												.												.	.	.
Template Conservation																.	.	.	.												.												.	.	.
Template Sequence		L	V	V	V	G	N	A	X	K	R	G	X	D	V	.	.	.	.	I	E	Y	X	L	D	T	G	L	R	Y	.	T	S	G	P	Q	F	L	S	E	Q	V	.	.	.	L	Q	S	R	H	V	I	A	V	A	G	T	H	G	K	T	T	T	T	T	X	L	A	W	I	L	H	Y	A	G	I	D	A	G	F	L
Template Known Secondary structure							T	T			T	T	S			.	.	.	.								T				.											T	.	.	.	G	G	G	S								S	S																T	T
Template Predicted Secondary structure																.	.	.	.												.												.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.
Query Sequence		S	S	P	H	L	V	R	Y	T	E	R	V	R	V	Q	G	Q	E	L	P	E	S	A	H	T	A	S	F	A	E	I	E	S	A	R	G	D	I	S	L	T	Y	F	E	Y	G	T	L	S	A	L	W	L	F	K	Q	A	Q	L	D	V	V	I	L	E	V	G	L	G	G	.	.	.	.	.	R	L	D	A	T
Query Conservation																																																																								.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	G	V	P	L	V	N	T	T	D	T	N	L	Q	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	H	S	S	Y	L	G	T	E	K	D	D	S	D	N	S	V	N	T	G	Y	F	V	I	E	A	D	E	Y	D	S	A	F	F	D	K	R	S	K	F
Template Known Secondary structure			S			B				S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S									S	S		T	T												S				B	T	T	B
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.																							.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		N	I	V	D	A	D	V	A	V	V	T	S	I	A	L	D	H	T	D	W	L	G	P	D	R	E	S	I	G	R	E	K	A	G	I	F	R	S	E	K	P	A	I	V	G	E	P	E	M	P	S	T	I	A	D	V	A	Q	E	K	G	A	L	L	Q	R	R	G	V	E	W	N	Y	S	V	T	D	H	.	.
Query Conservation																																																																																.	.
Alig confidence																									.	.	.	.																																																				.	.
Template Conservation																									.	.	.	.
Template Sequence		V	H	Y	R	P	R	T	A	I	L	N	N	L	E	F	D	D	L	D	A	I	Q	T	.	.	.	.	Q	F	H	H	X	V	R	X	I	P	S	T	G	K	I	I	X	P	A	A	T	I	S	L	E	D	T	L	A	K	G	V	W	T	P	I	W	R	T	S	V	I	D	N	S	S	D	W	Q	A	E	L	I
Template Known Secondary structure							S																		.	.	.	.							T	T	S		T	T	S						S	S										T				S													S
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
									235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																					.																.											.	.
Query SS confidence		.	.	.	.	.	.	.																																					.																.											.	.
Query Sequence		.	.	.	.	.	.	.	D	W	A	F	S	D	A	H	G	T	L	E	N	L	P	L	P	L	V	P	Q	P	N	A	A	T	A	L	A	A	L	R	A	S	G	L	.	E	V	S	E	N	A	I	R	D	G	I	A	S	A	I	.	L	P	G	R	F	Q	I	V	S	E	.	.	S	P	R	V	I	F	D	V
Query Conservation		.	.	.	.	.	.	.																																					.																.											.	.
Alig confidence		.	.	.	.	.	.	.																																					.																.											.	.
Template Conservation
Template Sequence		S	A	D	G	S	Q	F	T	V	S	F	N	D	N	K	E	A	T	A	L	V	N	W	S	X	S	G	L	H	N	V	N	N	A	L	V	A	I	A	A	A	Y	N	I	G	V	S	V	K	T	A	C	A	A	L	S	A	F	A	G	I	K	R	R	X	E	L	I	G	D	V	N	D	I	L	V	F	D	D	F
Template Known Secondary structure			T	T	T	T							T	T											S			S																	T	T												T				B	T	T	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.					.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.							370	.	.	.
Predicted Secondary structure																																		.	.	.	.																																			.	.	.	.	.	.
Query SS confidence																																		.	.	.	.																																			.	.	.	.	.	.
Query Sequence		A	H	N	P	H	A	A	E	Y	L	T	G	R	M	K	A	L	P	K	N	G	R	V	L	A	V	I	G	M	L	H	D	.	.	.	.	K	D	I	A	G	T	L	A	W	L	K	S	V	V	D	D	W	Y	C	A	P	L	E	G	P	R	G	A	T	A	E	Q	L	L	.	.	.	.	.	.	E	H	L	G
Query Conservation																																		.	.	.	.																																			.	.	.	.	.	.
Alig confidence																																		.	.	.	.																																			.	.	.	.	.	.
Template Conservation
Template Sequence		A	H	H	P	T	A	I	T	T	T	L	D	G	A	K	K	K	L	A	D	R	R	L	W	A	I	I	E	P	R	S	N	T	X	K	X	G	I	H	Q	D	S	L	A	Q	S	A	T	L	A	D	H	T	L	W	Y	E	P	T	G	L	E	W	G	L	K	E	V	I	D	N	A	T	I	A	N	P	S	I	G
Template Known Secondary structure				S																T	T	S												S	S			S			T	T						T	T	T	S	S								T	T				S													G	G	G
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400			.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.
Predicted Secondary structure																													.	.									.
Query SS confidence																													.	.									.
Query Sequence		N	G	K	S	F	D	S	V	A	Q	A	W	D	A	A	M	A	D	A	K	A	E	D	T	V	L	V	.	.	C	G	S	F	H	T	V	A	.	H	V	M	E	V	I	D	A
Query Conservation																													.	.									.
Alig confidence																													.	.									.
Template Conservation
Template Sequence		S	Q	Q	V	L	S	S	V	D	D	I	I	K	H	I	C	T	H	A	K	A	G	D	A	I	V	I	X	S	N	G	G	F	E	G	I	H	Q	R	L	L	T	A	L	G	N
Template Known Secondary structure							S															T	T								S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500