Job Description P08192 Confidence 94.74% Date Thu Jan 5 11:00:51 GMT 2012 Rank 66 Aligned Residues 178 % Identity 16% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		36	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.																.	.
Query SS confidence										.	.	.	.	.	.																.	.
Query Sequence		S	L	V	A	A	R	L	G	.	.	.	.	.	.	V	L	K	P	A	P	F	V	F	T	V	A	G	T	N	.	.	G	K	G	T	T	C	R	T	L	E	S	I	L	M	A	A	G	Y	K	V	G	V	Y	S	S	P	H	L	V	R	Y	T	E	R	V	R	V	Q	G	Q	E	L	P	E	S	A	H	T	A
Query Conservation										.	.	.	.	.	.																.	.
Alig confidence										.	.	.	.	.	.																.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	L	T	K	F	L	G	T	E	A	K	P	I	E	I	K	E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	.	.	.	.	.	.	.	.	.	.	.	.	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R
Template Known Secondary structure								T	T	S	S								S	S	S									T	T	S	S														T	T	T						.	.	.	.	.	.	.	.	.	.	.	.						S	S	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.													.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.										150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																									.	.																				.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.																				.	.	.	.	.	.	.	.	.
Query Sequence		S	F	A	E	I	E	S	A	R	G	D	I	S	L	T	Y	F	E	Y	G	T	L	S	.	.	A	L	W	L	F	K	Q	A	Q	L	D	V	V	I	L	E	V	G	L	.	.	.	.	.	.	.	.	.	G	G	R	L	D	A	T	N	I	V	D	A	D	V	A	V	V	T	S	I	A	L	D	H	T	D	W
Query Conservation																									.	.																				.	.	.	.	.	.	.	.	.
Alig confidence																									.	.																				.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.
Template Sequence		Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	.	.	.	.	.	T
Template Known Secondary structure					G	G	G	T							T	T																		T	T		S										S	S																			S								G	.	.	.	.	.	G
Template Predicted Secondary structure																																																																												.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		L	G	P	D	R	E	S	I	G	R	E	K	A	G	I	F	R	S	E	K	P	A	I	V	G	E	P	.	.	E	M	P	S	T	I	A	D	V	A	Q	E	K	G	A	L	L	Q	R	R	G	V	E	W	N	Y	S
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		I	G	Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	P	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G	G	G	A	L	S	A	V	A	A	T	G	A	P	I	K	F	I	G	T	G	E	K	I	D
Template Known Secondary structure		G	G	G	G											S		T	T									S	S		S	S										T	T										S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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