Job Description P08192 Confidence 100.00% Date Thu Jan 5 11:00:51 GMT 2012 Rank 14 Aligned Residues 341 % Identity 22% Template c2am1A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine-d-glutamyl-lysine-d-alanyl-d- PDBTitle: sp protein ligand 1 Resolution 2.50 Å

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		32	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		L	E	R	V	S	L	V	A	A	R	L	G	.	.	.	V	L	K	P	A	P	F	V	F	T	V	A	G	T	N	G	K	G	T	T	C	R	T	L	E	S	I	L	M	A	A	G	Y	K	V	G	V	Y	S	S	P	H	L	V	R	Y	T	E	R	V	R	V	Q	G	Q	E	L	P	E	S	A	H	T	A	S
Query Conservation														.	.	.
Alig confidence														.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	D	V	L	T	A	F	Q	S	L	A	S	Y	Y	L	E	K	T	T	V	D	V	F	A	V	T	G	S	N	G	K	T	T	T	K	D	X	L	A	H	L	L	S	T	R	Y	K	T	Y	K	T	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S																													S	S	S											T	T	T	S							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.
Query SS confidence																																																	.	.	.
Query Sequence		F	A	E	I	E	S	A	R	G	D	I	S	L	T	Y	F	E	Y	G	T	L	S	A	L	W	L	F	K	Q	A	Q	L	D	V	V	I	L	E	V	G	L	G	G	R	L	D	A	.	.	.	T	N	I	V	D	A	D	V	A	V	V	T	S	I	A	L	D	H	T	D	W	L	G	P	D	R	E	S	I	G
Query Conservation																																																	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.																								.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	N	N	E	I	G	L	P	Y	T	V	L	H	X	P	E	G	T	E	K	L	V	L	E	X	G	Q	D	H	L	G	D	I	H	L	L	S	E	L	A	R	P	K	T	A	I	V	T	L	V	G	E	A	H	L	A	F	F	K	.	D	R	S	E	I	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	T			S	T	T								T			T	T											S	S	T	T												S										S	S		T	T			.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.
Template SS confidence
															134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.
		186	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.																																																						.	.	.	.
Query SS confidence									.	.	.																																																						.	.	.	.
Query Sequence		R	E	K	A	G	I	F	.	.	.	R	S	E	K	P	A	I	V	G	E	P	E	M	P	S	T	I	A	D	V	A	Q	E	K	G	A	L	L	Q	R	R	G	V	E	W	N	Y	S	V	T	D	H	D	W	A	F	S	D	A	H	G	T	L	.	.	.	.	E	N	L	P	L	P	L	V	P	Q	P	N	A
Query Conservation									.	.	.																																																						.	.	.	.
Alig confidence									.	.	.														.	.	.	.																																					.	.	.	.
Template Conservation																									.	.	.	.
Template Sequence		K	G	K	X	Q	I	A	D	G	X	A	S	G	S	L	L	L	A	P	A	D	P	I	.	.	.	.	V	E	D	Y	L	P	I	D	K	K	V	V	R	F	G	Q	G	A	E	L	E	I	T	D	L	V	E	R	K	D	S	L	T	F	K	A	N	F	L	E	Q	A	L	D	L	P	V	T	G	K	Y	N	A
Template Known Secondary structure					G	G	G	G	T	T			T	T							S		G	G	.	.	.	.	G	G	G	G			S	S	S						S	T	T	S	S	B									S	S							T	T		S	S					S	S
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.				.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.
Predicted Secondary structure														.																.													.	.	.																											.	.
Query SS confidence														.																.													.	.	.																											.	.
Query Sequence		A	T	A	L	A	A	L	R	A	S	G	L	.	E	V	S	E	N	A	I	R	D	G	I	A	S	A	I	.	L	P	G	R	F	Q	I	V	S	E	S	P	.	.	.	R	V	I	F	D	V	A	H	N	P	H	A	A	E	Y	L	T	G	R	M	K	A	L	P	K	N	.	.	G	R	V	L	A	V	I	G
Query Conservation														.																.													.	.	.																											.	.
Alig confidence														.																.													.	.	.																											.	.
Template Conservation
Template Sequence		T	N	A	X	I	A	S	Y	V	A	L	Q	E	G	V	S	E	E	Q	I	R	L	A	F	Q	H	L	E	L	T	R	N	R	T	E	W	K	K	A	A	N	G	A	D	I	L	S	D	V	Y	N	A	N	P	T	A	X	K	L	I	L	E	T	F	S	A	I	P	A	N	E	G	G	K	K	I	A	V	L	A
Template Known Secondary structure														T	T										G	G	G								S						T	T	T								S			S												T	T	S				S	S
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		332	.	.	.	.	.							.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.							.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.												.																														.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.												.																														.	.	.	.	.	.
Query Sequence		M	L	H	D	K	D	.	.	.	.	.	.	I	A	G	T	L	A	W	L	K	S	V	.	V	D	D	W	Y	C	A	P	L	E	G	P	R	G	A	T	A	E	Q	L	L	E	H	L	G	N	G	K	S	.	.	.	.	.	.	F	D	S	V	A	Q	A	W	D	A	A	M	A	D	A	K	A	E	D	T	V
Query Conservation								.	.	.	.	.	.												.																														.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.												.																														.	.	.	.	.	.
Template Conservation
Template Sequence		D	X	K	E	L	G	D	Q	S	V	Q	L	H	N	Q	X	I	L	S	L	S	P	D	V	L	D	I	V	I	F	Y	G	E	D	I	A	Q	L	A	Q	L	A	S	Q	X	F	P	I	G	H	V	Y	Y	F	K	K	T	E	D	Q	D	Q	F	E	D	L	V	K	Q	V	K	E	S	L	G	A	H	D	Q	I
Template Known Secondary structure								T	T								G	G	G	G			T	T	T		S							S	T	T											S		T	T							B	S	S	S		B	T														T	T
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		399	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		L	V	C	G	S	F	H	T	.	V	A	H	V	M	E	V	I	D	A
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		L	L	K	G	S	N	S	X	N	L	A	K	L	V	E	S	L	E	N
Template Known Secondary structure					S	S
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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