Job Description P08192 Confidence 100.00% Date Thu Jan 5 11:00:51 GMT 2012 Rank 17 Aligned Residues 325 % Identity 18% Template c1gg4A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamyl-2,6- PDBTitle: crystal structure of escherichia coli udpmurnac-tripeptide2 d-alanyl-d-alanine-adding enzyme (murf) at 2.3 angstrom3 resolution Resolution 2.30 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	S	L	V	A	A	R	L	G	V	L	K	P	A	P	F	V	F	T	V	A	G	T	N	G	K	G	T	T	C	R	T	L	E	S	I	L	M	A	A	G	Y	K	V	G	V	Y	S	S	P	H	L	V	R	Y	T	E	R	V	R	V	Q	G	Q	E	L	P	E	S	A	H	T	A	S	F	A	E	I	E
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	F	G	E	L	A	A	W	V	R	Q	Q	V	P	A	R	V	V	A	L	T	G	S	S	G	K	T	S	V	K	E	X	T	A	A	I	L	S	Q	C	G	N	T	L	Y	T	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															S										S	S														T	T	T	S							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		S	A	R	G	D	I	S	L	T	Y	F	E	Y	G	T	L	S	A	L	W	L	F	K	Q	A	Q	L	D	V	V	I	L	E	V	G	L	.	.	.	G	G	R	L	D	A	T	N	I	V	D	A	D	V	A	V	V	T	S	I	A	L	D	H	T	D	W	L	G	P	D	R	E	S	I	G	R	E	K	A	G
Query Conservation																																						.	.	.
Alig confidence		.	.	.	.	.	.	.	.																													.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	N	L	N	N	D	I	G	V	P	X	T	L	L	R	L	T	P	E	Y	D	Y	A	V	I	E	L	G	A	N	H	Q	G	E	I	A	W	T	V	S	L	T	R	P	E	A	A	L	V	N	N	L	A	.	.	.	.	.	.	.	.	.	S	L	A	G	V	A	K	A	K	G	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	T			S	T	T							T	T			T	T		S									S	S	S	S												S									.	.	.	.	.	.	.	.	.											G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
										134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.										.	.	.	.	190	.	.	.	.	.	.
		191	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.										.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.																																			.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.																																			.	.	.	.	.	.	.	.	.
Query Sequence		I	F	.	.	.	R	S	E	K	P	A	I	V	G	E	P	E	M	P	S	T	I	A	D	V	A	Q	E	K	G	A	L	L	Q	R	R	G	V	E	.	.	.	.	.	.	.	.	.	W	N	Y	S	V	T	D	H	D	W	A	F	S	D	A	H	G	T	L	E	N	L	P	L	P	L	V	P	Q	P	N	A
Query Conservation				.	.	.																																			.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																																			.	.	.	.	.	.	.	.	.																				.
Template Conservation																																																																					.
Template Sequence		I	F	S	G	L	P	E	N	G	I	A	I	X	N	A	D	N	N	D	W	L	N	W	Q	S	V	I	G	S	R	K	V	W	R	F	S	P	N	A	A	N	S	D	F	T	A	T	N	I	H	V	T	S	H	G	T	E	F	T	L	Q	T	P	T	G	S	V	.	D	V	L	L	P	L	P	G	R	H	N	I
Template Known Secondary structure		G	G	G	G			T	T							T	T	B											T	T	S							S	S		T	T		S	B									S	S	S								T	T				.						S	S	S	T
Template Predicted Secondary structure																																																																					.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.				.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure														.																.													.	.	.
Query SS confidence														.																.													.	.	.
Query Sequence		A	T	A	L	A	A	L	R	A	S	G	L	.	E	V	S	E	N	A	I	R	D	G	I	A	S	A	I	.	L	P	G	R	F	Q	I	V	S	E	S	P	.	.	.	R	V	I	F	D	V	A	H	N	P	H	A	A	E	Y	L	T	G	R	M	K	A	L	P	K	N	G	R	V	L	A	V	I	G	M	L
Query Conservation														.																.													.	.	.
Alig confidence														.																.													.	.	.																										.	.
Template Conservation																																																																							.	.
Template Sequence		A	N	A	L	A	A	A	A	L	S	X	S	V	G	A	T	L	D	A	I	K	A	G	L	A	N	L	K	A	V	P	G	R	L	F	P	I	Q	L	A	E	N	Q	L	L	L	D	D	S	Y	N	A	N	V	G	S	X	T	A	A	V	Q	V	L	A	E	X	P	G	.	.	Y	R	V	L	V	V	G	D	X
Template Known Secondary structure														T	T											T	T					T	T	S	S							T	T								S																	S	S	S	.	.
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.
		334	.							.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.			.	.	.	400	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.														.																																																	.	.
Query SS confidence				.	.	.	.	.	.														.																																																	.	.
Query Sequence		H	D	.	.	.	.	.	.	K	D	I	A	G	T	L	A	W	L	K	S	V	.	V	D	D	W	Y	C	A	P	L	E	G	P	R	G	A	T	A	E	Q	L	L	E	H	L	G	N	G	K	S	F	D	S	V	A	Q	A	W	D	A	A	M	A	D	A	K	A	E	D	.	.	T	V	L	V	C	G	S	F
Query Conservation				.	.	.	.	.	.														.																																																	.	.
Alig confidence				.	.	.	.	.	.														.												.	.	.	.	.	.																																.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		A	E	L	G	A	E	S	E	A	C	H	V	Q	V	G	E	A	A	K	A	A	G	I	D	R	V	L	S	V	G	K	Q	S	.	.	.	.	.	.	H	A	I	S	T	A	S	G	V	G	E	H	F	A	D	K	T	A	L	I	T	R	L	K	L	L	I	A	E	Q	Q	V	I	T	I	L	V	K	G	S	R
Template Known Secondary structure					T	T																	T		S						S	S	S	T	.	.	.	.	.	.							T	T	S					S	S																S	S									G
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.							.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		405	.		.	.	.	410	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		H	T	.	V	A	H	V	M	E	V	I	D
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		S	A	A	X	E	E	V	V	R	A	L	Q
Template Known Secondary structure		G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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