Job Description P08192 Confidence 100.00% Date Thu Jan 5 11:00:51 GMT 2012 Rank 6 Aligned Residues 361 % Identity 22% Template c1e8cB_ PDB info PDB header:ligase Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6- PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli Resolution 2.00 Å

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		32	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		L	E	R	V	S	L	V	A	A	R	L	.	.	.	.	.	G	V	L	K	P	A	P	F	V	F	T	V	A	G	T	N	G	K	G	T	T	C	R	T	L	E	S	I	L	M	A	A	G	Y	K	V	G	V	Y	S	S	P	H	L	V	R	Y	T	E	R	V	R	V	Q	G	Q	E	L	P	E	S	A	H	T
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		L	S	Q	L	N	E	R	L	S	A	L	A	G	R	F	Y	H	E	P	S	D	N	L	R	L	V	G	V	T	G	T	N	G	K	T	T	T	T	Q	L	L	A	Q	W	S	Q	L	L	G	E	I	S	A	V	X	G	T	V	G	N	G	L	L	G	K	V	I	P	T	E	N	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T													T	T		G	G	G	S	S							S	S	S																T	T							S	T	T		B			T	T			B			S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		A	S	F	A	E	I	E	S	A	R	G	D	I	S	L	T	Y	F	E	Y	G	T	L	S	A	L	W	L	F	K	Q	A	Q	L	D	V	V	I	L	E	V	G	L	G	G	.	R	L	D	A	T	N	I	V	D	A	D	V	A	V	V	T	S	I	A	L	D	H	T	D	W	L	G	P	D	R	E	S	I	G
Query Conservation																																															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.																												.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	G	S	A	V	D	V	Q	H	E	L	A	G	L	V	D	Q	G	A	T	F	C	A	X	E	V	S	S	H	G	L	V	Q	H	R	V	A	A	L	K	F	A	A	S	V	F	T	N	L	S	R	D	H	L	D	Y	H	G	.	D	X	E	H	Y	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S																T	T															T	T	T	T	T	T		B		S									S								.	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.
Template SS confidence
																157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.
		186	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.														.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure									.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	K	A	G	I	F	.	R	S	E	K	P	A	I	V	G	E	P	E	M	P	S	T	I	A	D	V	A	Q	E	K	G	A	L	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	G	V	E	W	N	Y	S	V	T	D	H	D	W	A	F	S	D	A	H	G	T	L	E	N	L	P	L	P
Query Conservation									.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																														.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																												.
Template Sequence		A	A	W	L	L	Y	S	E	H	H	C	G	Q	A	I	I	N	A	D	D	E	V	G	R	R	W	L	A	K	L	P	D	A	V	A	V	S	X	E	D	H	I	N	P	N	C	H	G	R	W	L	K	A	T	E	V	N	Y	H	D	S	G	A	T	I	R	F	S	S	S	W	G	D	G	.	E	I	E	S	H
Template Known Secondary structure									S	S	B								T	T	S								T	T		T	T						S	S	S				T	T	T		S												S	S									T	T				.
Template Predicted Secondary structure																																																																												.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.			.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																					.																.										.	.
Query SS confidence																					.																.										.	.
Query Sequence		L	V	P	Q	P	N	A	A	T	A	L	A	A	L	R	A	S	G	L	.	E	V	S	E	N	A	I	R	D	G	I	A	S	A	I	.	L	P	G	R	F	Q	I	V	S	.	.	E	S	P	R	V	I	F	D	V	A	H	N	P	H	A	A	E	Y	L	T	G	R	M	K	A	L	P	K	N	G	R	V	L
Query Conservation																					.																.										.	.
Alig confidence																					.																.										.	.																												.
Template Conservation																																																																												.
Template Sequence		L	X	G	A	F	N	V	S	N	L	L	L	A	L	A	T	L	L	A	L	G	Y	P	L	A	D	L	L	K	T	A	A	R	L	Q	P	V	C	G	R	X	E	V	F	T	A	P	G	K	P	T	V	V	V	D	Y	A	H	T	P	D	A	L	E	K	A	L	Q	A	A	R	L	H	C	.	A	G	K	L	W
Template Known Secondary structure		S		S																	T	T										G	G	G					T	T	S	S						T	T	S										S														T		.	S	S
Template Predicted Secondary structure																																																																												.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380
		328	.	330	.	.	.	.	.	.	.				.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.								.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.																																					.	.	.	.	.	.	.
Query SS confidence												.	.	.																																					.	.	.	.	.	.	.
Query Sequence		A	V	I	G	M	L	H	D	K	D	.	.	.	I	A	G	T	L	A	W	L	K	S	V	V	D	D	W	Y	C	A	P	L	E	G	P	R	G	A	T	A	E	Q	L	L	E	H	L	G	.	.	.	.	.	.	.	N	G	K	S	F	D	S	V	A	Q	A	W	D	A	A	M	A	D	A	K	A	E	D	T
Query Conservation												.	.	.																																					.	.	.	.	.	.	.
Alig confidence												.	.	.																				.																	.	.	.	.	.	.	.
Template Conservation																																		.
Template Sequence		C	V	F	G	C	G	G	D	R	D	K	G	K	R	P	L	X	G	A	I	A	E	E	F	A	D	V	A	V	V	T	D	.	D	N	P	R	T	E	E	P	R	A	I	I	N	D	I	L	A	G	X	L	D	A	G	H	A	K	V	X	E	G	R	A	E	A	V	T	C	A	V	X	Q	A	K	E	N	D	V
Template Known Secondary structure								S	S	S		S	T														S							.	S			B	T	S											T	T	S	S		T	T	S	S				S													S		T	T
Template Predicted Secondary structure																																		.
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.																		.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	V	C	G	S	F	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	A	H	V	M	E	V	I	D	A	R	R	S
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	V	A	G	K	G	H	E	D	Y	Q	I	V	G	N	Q	R	L	D	Y	S	D	R	V	T	V	A	R	L	L	G	V	I	A	R	S	H	H
Template Known Secondary structure						S		T	T							T	T																T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.