Job Description P02932 Confidence 69.37% Date Thu Jan 5 10:57:46 GMT 2012 Rank 45 Aligned Residues 158 % Identity 14% Template d2gufa1 SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 1.95

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		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.							.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																																									.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.
Query Sequence		D	G	F	G	T	S	L	T	Y	D	F	G	G	S	D	F	A	I	S	G	A	Y	T	N	S	D	R	T	N	E	Q	N	L	Q	S	R	G	T	G	K	R	A	E	A	W	A	T	G	L	K	Y	D	A	N	N	.	.	.	.	.	.	I	Y	L	A	T	F	Y	S	E	T	R	K	M	T	P	I	T	G	G
Query Conservation																																																									.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.
Template Conservation
Template Sequence		K	Q	W	E	G	A	F	E	G	L	T	A	G	V	N	W	R	I	S	G	Y	R	N	D	V	S	D	L	I	D	Y	D	D	H	T	L	K	Y	Y	N	E	G	K	A	R	I	K	G	V	E	A	T	A	N	F	D	T	G	P	L	T	H	T	V	S	Y	D	Y	V	D	A	R	N	A	I	T	D	T	P	L
Template Known Secondary structure													T	T																				T	T	T	T																						T	T															T	T	T			B
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300								.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.
Query Sequence		F	A	N	K	T	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	L	G	Y	V	L	S	K	G	K	D	I	E	G	I	G	D	E	.	.	.	.	.	.	.	D	L	V	N	Y	I	D	V	G	A	T	Y	Y	F	N	K	N	M	S	A	F	V	D	Y	K	I	N	Q	L	D	S	D	N
Query Conservation																																										.	.	.	.	.	.	.
Alig confidence																		.																								.	.	.	.	.	.	.																										.
Template Conservation																		.																																																								.
Template Sequence		L	R	R	A	K	Q	Q	V	K	Y	Q	L	D	W	Q	L	.	Y	D	F	D	W	G	I	T	Y	Q	Y	L	G	T	R	Y	D	K	D	Y	S	S	Y	P	Y	Q	T	V	K	M	G	G	V	S	L	W	D	L	A	V	A	Y	P	V	T	S	H	L	T	V	R	G	K	I	A	.	N	L	F	D	K	D	Y
Template Known Secondary structure		T	T			S												.	T	T																			S	S	S	S																				S	S	S	S									.	S	T	T
Template Predicted Secondary structure																		.																																																								.
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.		.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.		.	.	.	570	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	N	I	N	N	D	D	I	V	A	V	G	M	T	Y	Q	F
Query Conservation
Alig confidence						.	.	.	.	.
Template Conservation						.	.	.	.	.
Template Sequence		A	G	R	E	.	.	.	.	.	Y	T	L	S	G	S	Y	T	F
Template Known Secondary structure						.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.
Template SS confidence
		582	.	.	.						.	.	.	.	590	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions