Job Description P02932 Confidence 4.14% Date Thu Jan 5 10:57:46 GMT 2012 Rank 61 Aligned Residues 124 % Identity 15% Template d1fepa_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.40

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		227	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure															.																											.	.	.																																.	.	.	.	.	.
Query SS confidence															.																											.	.	.																																.	.	.	.	.	.
Query Sequence		R	A	E	A	W	A	T	G	L	K	Y	D	A	.	N	N	I	Y	L	A	T	F	Y	S	E	T	R	K	M	T	P	I	T	G	G	F	A	N	K	T	.	.	.	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	L	G	Y	V	L	S	K	G	K	D	I	E	G	.	.	.	.	.	.
Query Conservation															.																											.	.	.																																.	.	.	.	.	.
Alig confidence															.																											.	.	.																																.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	E	G	L	E	G	S	L	N	V	P	V	S	E	T	V	X	W	T	N	N	I	T	Y	X	L	K	S	E	N	K	T	T	G	D	R	L	S	I	I	P	E	Y	T	L	N	S	T	L	S	W	Q	A	R	E	D	L	S	X	Q	T	T	F	T	W	Y	G	K	Q	Q	P	K	K	Y	N	Y	K	G	Q
Template Known Secondary structure																T	T																T	T	T				S	S				S													T	T													B				S	B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
								297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.																								.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	I	G	D	E	D	L	V	N	Y	I	D	V	G	A	T	Y	Y	F	N	K	N	M	S	A	F	V	D	Y	K	I	N	Q	L	D	S	D	N	K	L	N	I	N	N	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	A	V	G	M
Query Conservation		.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																														.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.
Template Sequence		P	A	V	G	P	E	T	K	E	I	S	P	Y	S	I	V	G	L	S	A	T	W	D	V	T	K	N	V	S	L	T	G	G	V	D	.	N	L	F	D	K	R	L	W	R	A	G	N	A	Q	T	T	G	D	L	A	G	A	N	Y	I	A	G	A	G	A	Y	T	Y	N	E	P	G	R	T	W	Y	X	S	V
Template Known Secondary structure		B			G	G	G	G			B															S	S	S									.	S	T	T				B				S		S	S					T	T	S	S	S						T	T					B
Template Predicted Secondary structure																																					.
Template SS confidence
		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.		.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
		348	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	T	H	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		721	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions