Job Description P02932 Confidence 98.57% Date Thu Jan 5 10:57:46 GMT 2012 Rank 17 Aligned Residues 305 % Identity 13% Template c2y0lA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:cis-aconitate porin opdh; PDBTitle: crystal structure of pseudomonas aeruginosa opdo Resolution 2.59 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	Y	G	K	V	K	A	M	H	Y	M	S	D	N	A	S	K	D	G	D	Q	S	Y	I	R	F	G	F	K	G	E	T	Q	I	N	D	Q	L	T	G	Y	G	R	W	E	A	E	F	A	G	N	K	A	E	S	D	T	A	Q	Q	K	T	R	L	A	F	A	G	L	K	Y	K	D	L	G	S	F	D	Y
Query Conservation
Alig confidence																	.	.																							.																																				.
Template Conservation																	.	.																							.																																				.
Template Sequence		K	A	S	L	E	T	R	N	F	Y	M	N	R	D	F	.	.	R	K	R	E	E	W	A	Q	G	F	I	L	N	L	Q	S	G	Y	T	Q	G	T	.	V	G	F	G	L	D	A	M	G	M	L	G	V	K	L	D	S	P	D	T	Y	S	K	L	G	L	T	A	K	V	K	V	S	Q	S	.	E	L	K	V
Template Known Secondary structure																	.	.																				S	S	S	.																																	T	T		.
Template Predicted Secondary structure																	.	.																							.																																				.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.
		113	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.															.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure					.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	R	N	.	.	L	G	A	L	Y	D	V	E	A	W	T	D	M	F	P	E	F	G	G	D	S	S	A	Q	T	D	N	F	M	T	K	R	A	S	G	L	A	T	Y	R	N	T	D	F	F	G	V	I	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	L	T	L	Q	Y	Q	G	K	N
Query Conservation					.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	L	I	P	K	L	P	S	V	Q	P	N	N	G	R	I	F	P	Q	I	F	E	G	A	L	L	T	S	K	E	I	K	D	L	G	F	T	A	G	R	L	E	K	T	K	I	D	S	E	D	L	A	L	N	D	K	N	G	R	F	A	G	V	S	A	D	H	F	D	L	G	G	L	D	Y	K	L	T	D
Template Known Secondary structure								B	T	T	B					S	S	S	S													S	S	T	T																			B	B			G	G	G	S	S				B		S												S	S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		177	.								.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.
Query Sequence		E	N	.	.	.	.	.	.	.	R	D	V	K	K	Q	N	G	D	G	F	G	T	S	L	T	Y	D	F	G	G	S	D	F	A	I	S	G	A	Y	T	N	S	D	R	T	N	E	Q	N	L	Q	S	R	G	T	G	K	R	A	E	A	W	A	T	G	L	K	Y	D	A	N	N	I	Y	L	A	T	F	Y	S
Query Conservation				.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.																																						.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		Q	L	T	A	S	Y	H	Y	S	N	L	Q	D	V	Y	R	Q	H	F	V	G	L	L	H	S	W	P	I	G	P	G	E	L	T	S	D	L	R	F	A	R	S	T	D	S	G	.	.	.	.	S	A	K	A	G	G	I	D	N	K	S	L	N	G	M	F	T	Y	S	L	G	N	H	A	F	G	A	A	W	Q
Template Known Secondary structure		S											T	T	T															S	S	S															T	.	.	.	.	T		T	T																	T	T
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.																	.	.	.	.	.	.	270	.	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence		E	T	R	K	M	T	P	I	T	G	G	F	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	Q	N	F	E	A	V	A	Q	Y	Q	F	D	.	.	.	.	F	G	L	R	P	S	L	G	Y	V	L	S	K	G	K	D	I	E	G	I	G	D	E	D	L	V	N	Y	I	D	V	G
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.															.
Template Conservation																																																																.
Template Sequence		R	M	N	G	D	D	A	F	P	Y	L	E	G	S	N	P	Y	L	V	N	F	V	Q	V	N	D	F	A	G	P	K	E	R	S	W	Q	L	R	Y	D	Y	D	F	V	G	L	G	I	P	G	L	T	F	M	T	R	Y	V	K	G	D	N	.	V	E	L	A	G	Q	G	E	G	R	E	W	E	R	N	T	E
Template Known Secondary structure					S	S	S					B	T	T						T	T			S	S					S	T	T												G	G	G	G	T		T	T													.				S
Template Predicted Secondary structure																																																																.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		310	.	.	.	.	.					.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	A	F	V	D	Y	K	I	N	Q	L	D	S	D	N	K	L	N	I	N	N	D	D	I	V	A	V	G	M	T	Y	Q	F
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.																.	.	.	.	.
Template Conservation																											.	.	.	.	.
Template Sequence		L	Q	Y	V	F	Q	S	G	A	L	K	N	L	G	I	R	W	R	N	A	T	F	R	S	N	.	.	.	.	.	F	T	R	D	I	D	E	N	R	L	I	V	S	Y	T	L
Template Known Secondary structure								S	S	T	T	T	T													S	.	.	.	.	.	S	S
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.						.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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