Job Description P02932 Confidence 98.22% Date Thu Jan 5 10:57:46 GMT 2012 Rank 24 Aligned Residues 307 % Identity 12% Template c2qtkB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable porin; PDBTitle: crystal structure of the outer membrane protein opdk from2 pseudomonas aeruginosa Resolution 2.80 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.							90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																								.																				.	.	.	.	.	.
Query SS confidence																																								.																				.	.	.	.	.	.
Query Sequence		D	V	Y	G	K	V	K	A	M	H	Y	M	S	D	N	A	S	K	D	G	D	Q	S	Y	I	R	F	G	F	K	G	E	T	Q	I	N	D	Q	.	L	T	G	Y	G	R	W	E	A	E	F	A	G	N	K	A	E	S	D	.	.	.	.	.	.	T	A	Q	Q	K	T	R	L	A	F	A	G	L	K	Y	K
Query Conservation																																								.																				.	.	.	.	.	.
Alig confidence																	.	.	.																					.																				.	.	.	.	.	.
Template Conservation																	.	.	.
Template Sequence		K	T	D	L	V	L	R	N	Y	Y	F	N	R	D	F	.	.	.	L	V	D	E	W	A	Q	G	F	I	L	K	F	S	S	G	Y	T	P	G	T	V	G	V	G	L	D	A	I	G	L	F	G	V	K	L	N	N	S	E	L	L	P	L	H	A	A	D	N	Y	G	R	V	G	V	A	A	K	L	R	V	S
Template Known Secondary structure																	.	.	.																			S	S	S	S																		S	S	S						S														S
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.															.	.	.	.
Predicted Secondary structure												.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	G	S	F	D	Y	G	R	N	.	.	L	G	A	L	Y	D	V	E	A	W	T	D	M	F	P	E	F	G	G	D	S	S	A	Q	T	D	N	F	M	T	K	R	A	S	G	L	A	T	Y	R	N	T	D	F	F	G	V	I	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	L	T
Query Conservation												.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.								.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		A	S	.	E	L	K	I	G	E	M	L	P	D	I	P	L	L	R	Y	D	D	G	R	L	L	P	Q	T	F	R	G	F	A	V	V	S	R	E	L	P	G	L	A	L	Q	A	G	R	F	D	A	V	S	L	R	N	S	A	D	M	Q	D	L	S	A	W	S	A	P	T	Q	K	S	D	G	F	N	Y	A	G
Template Known Secondary structure		S		.												T	T						S	S	S	S														S	T	T														T	T		S	S		B				B	T	T		T	T	S			S
Template Predicted Secondary structure				.
Template SS confidence
		105	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		L	Q	Y	Q	G	K	N	E	N	R	D	V	K	K	Q	N	G	.	.	.	.	.	.	D	G	F	G	T	S	L	T	Y	D	F	G	G	S	D	F	A	I	S	G	A	Y	T	N	S	D	R	T	N	E	Q	N	L	Q	S	R	G	T	G	K	R	A	E	A	W	A	T	G	L	K	Y	D	A	N	N	I	Y
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																														.	.
Template Conservation																																																						.	.
Template Sequence		A	E	Y	R	F	N	R	E	R	T	Q	L	G	L	W	H	G	Q	L	E	D	V	Y	R	Q	S	Y	A	N	L	L	H	K	Q	R	V	G	D	W	T	L	G	A	N	L	G	L	F	V	D	R	D	.	.	D	G	A	A	R	A	G	E	I	D	S	H	T	V	Y	G	L	F	S	A	G	I	G	L	H	T
Template Known Secondary structure							T	T	T	T											T	T	T															T	T															.	.		T	T		T	T																	T	T
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.																		.	.	.	.	.	.	270	.	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence		L	A	T	F	Y	S	E	T	R	K	M	T	P	I	T	G	G	F	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	Q	N	F	E	A	V	A	Q	Y	Q	F	D	.	.	.	.	F	G	L	R	P	S	L	G	Y	V	L	S	K	G	K	D	I	E	G	I	G	D	E	D	L
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.																				.
Template Conservation																																																																												.
Template Sequence		F	Y	L	G	L	Q	K	V	G	G	D	S	G	W	Q	S	V	Y	G	S	S	G	R	S	M	G	N	D	M	F	N	G	N	F	T	N	A	D	E	R	S	W	Q	V	R	Y	D	Y	D	F	V	G	L	G	W	P	G	L	I	G	M	V	R	Y	G	H	G	S	N	A	T	T	K	A	.	G	S	G	G	K
Template Known Secondary structure												S	S					B	T	T			G	G	G	S	T	T		B	T	T	B				S	B	T												G	G	G	G	T		T	T														B		S	S	.		S
Template Predicted Secondary structure																																																																												.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340
		303	.	.	.	.	.	.	310	.	.	.	.	.					.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		V	N	Y	I	D	V	G	A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	A	F	V	D	Y	K	I	N	Q	L	D	S	D	N	K	L	N	I	N	N	D	D	I	V	A	V	G	M	T	Y	Q	F
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.																.	.	.	.	.
Template Conservation																																		.	.	.	.	.
Template Sequence		E	W	E	R	D	V	E	L	G	Y	T	V	Q	S	G	P	L	A	R	L	N	V	R	L	N	H	A	S	N	R	R	S	.	.	.	.	.	F	N	S	D	F	D	Q	T	R	L	V	V	S	Y	P	L
Template Known Secondary structure															S	S	S	S	T	T													S	.	.	.	.	.	S	S
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.						.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions