Job Description P02932 Confidence 98.78% Date Thu Jan 5 10:57:46 GMT 2012 Rank 15 Aligned Residues 308 % Identity 13% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	A	S	A	S	V	Q	A	A	E	I	Y	N	K	D	G	N	K	L	D	V	Y	G	K	V	K	A	M	H	Y	M	S	D	N	A	S	K	D	G	D	Q	S	Y	I	R	F	G	F	K	G	E	T	Q	I	N	D	Q	L	T	G	Y	G	R	W	E	A	E	F	A	G	N	K	A	E	S	D	T	A	Q
Query Conservation
Alig confidence																		.	.	.	.																.	.	.																						.
Template Conservation																		.	.	.	.																.	.	.																						.
Template Sequence		X	F	V	S	D	Q	A	E	A	K	G	F	I	E	D	S	.	.	.	.	S	L	D	L	L	L	R	N	Y	Y	F	N	R	D	G	.	.	.	K	R	V	D	W	T	Q	G	F	L	T	T	Y	E	S	G	F	T	Q	G	T	.	V	G	F	G	V	D	A	F	G	Y	L	G	L	K	L	D	G	T	D	Y
Template Known Secondary structure			S				T	T	S				S	S	S	B		.	.	.	.																.	.	.																			S	S	S	.
Template Predicted Secondary structure																		.	.	.	.																.	.	.																						.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.					.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	T	R	L	A	F	A	G	L	K	Y	K	D	L	G	S	F	D	Y	G	R	N	L	G	A	L	Y	D	V	E	A	W	T	D	M	F	P	E	F	G	G	D	S	S	A	Q	T	D	N	F	M	T	K	R	A	S	G	L	A	T	Y	R	N	T	D	F	F	G	V	I	D	G	L	N	L	T	L	Q	Y
Query Conservation
Alig confidence						.											.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.											.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	R	A	G	.	G	A	V	K	V	R	I	S	K	T	.	X	L	K	W	G	E	X	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	A	P	V	F	A	A	G	G	S	R	L	F	P	Q	T	A	T	G	F	Q	L	Q	S	S	E	F	E	G	L	D	L	E	A	G	H
Template Known Secondary structure						.								T	T		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	T	T	B						S	S	S														S	T	T
Template Predicted Secondary structure						.											.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.		.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.																				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		173	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.																											.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure							.																					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	K	N	E	.	N	R	D	V	K	K	Q	N	G	D	G	F	G	T	S	L	T	Y	D	F	.	G	G	S	D	F	A	I	S	G	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	S	D	R	T	N	E	Q	N	L	Q	S	R	G	T
Query Conservation							.																					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	T	E	E	L	Y	A	T	Y	A	G	E	T	A	K	S	A	D	F	I	G	G	R	Y	A	I	T	D	N	L	S	A	S	L	Y	G	A	E	L	E	D	I	Y	R	Q	Y	Y	L	N	S	N	Y	T	I	P	L	A	S	D	Q	S	L	G	F	D	F	N	I	Y	R	T	N	D	E	G	K	A	K	A	G
Template Known Secondary structure									T	T	T					S											S	S	S	S											T	T	T																T	T																T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.																	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.					.	.	.	280	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query Sequence		G	K	R	A	E	A	W	A	T	G	L	K	Y	D	A	N	N	I	Y	L	A	T	F	Y	S	E	T	R	K	M	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	G	G	F	A	N	K	T	Q	N	F	E	A	V	A	Q	Y	Q	F	.	.	.	.	D	F	G	L	R	P	S	L
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		D	I	S	N	T	T	W	S	L	A	A	A	Y	T	L	D	A	H	T	F	T	L	A	Y	Q	K	V	H	G	D	Q	P	F	D	Y	I	G	F	G	S	I	F	L	A	N	S	V	Q	Y	S	D	F	N	G	P	G	E	K	S	W	Q	A	R	Y	D	L	N	L	A	S	Y	G	V	P	G	L	T	F	X	V
Template Known Secondary structure																	T	T												S	S	S											S	S	T	T			S	S						T	T												T	T	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.													.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.					.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Query Sequence		G	Y	V	L	S	K	G	K	D	.	.	.	.	.	.	.	.	.	.	.	.	I	E	G	I	G	D	E	D	L	V	N	Y	I	D	V	G	A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	A	F	V	D	Y	K	I	N	Q	L	D	S	D	N	K	L	N	I	N	N	D	D	I	V	A	V	G	M	T
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.																				.	.
Template Conservation																																																																				.	.
Template Sequence		R	Y	I	N	G	K	D	I	D	G	T	K	X	S	D	N	N	V	G	Y	K	N	Y	G	Y	G	E	D	G	K	H	H	E	T	N	L	E	A	K	Y	V	V	Q	S	G	P	A	K	D	L	S	F	R	I	R	Q	A	W	H	R	A	N	A	D	Q	G	.	.	E	G	D	Q	N	E	F	R	L	I	V	D
Template Known Secondary structure												T	T			S	S		T	T	T	S	S	S				S	S																S	S	T	T	T	T														T	T	T	S	.	.	S		S	B
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.			.	.	.	.	.	.	.	410	.	.	.	.
		349	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	P	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		415	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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