Job Description P02932 Confidence 96.69% Date Thu Jan 5 10:57:46 GMT 2012 Rank 29 Aligned Residues 134 % Identity 14% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		G	G	S	D	F	A	I	S	G	A	Y	T	N	S	D	R	T	N	E	Q	N	L	Q	S	R	G	T	G	K	R	A	E	A	W	A	T	G	L	K	Y	D	A	N	N	.	I	Y	L	A	T	F	Y	S	E	T	R	K	M	T	P	I	T	G	G	F	A	N	K	T	Q	N	F	E	A	V	A	Q	Y	Q	F
Query Conservation																																														.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.																		.															.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Template Sequence		N	T	W	Y	T	G	A	K	L	G	W	S	Q	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	R	E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	.	.	.	.	.	R	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	K
Template Known Secondary structure		S												T	T		.	.	.	.	.	.	.	.	.	.	.	.		S	S													S	S	S												S	S	S	.	.	.	.	.	S															T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.													20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.						.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
				277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.										.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure		.	.																		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	D	F	G	L	R	P	S	L	G	Y	V	L	S	K	G	K	D	.	.	.	.	.	.	.	.	.	I	E	G	I	G	D	E	D	L	V	N	Y	I	D	V	G	A	T	Y	Y	F	N	K	N	M	S	A	F	V	D	Y	K	I	N	Q	L	D	S	D	N	K	L	N	I	N	N	D	D	I	V	A	V
Query Conservation		.	.																		.	.	.	.	.	.	.	.	.
Alig confidence		.	.																		.	.	.	.	.	.	.	.	.																																		.	.	.
Template Conservation																																																															.	.	.
Template Sequence		L	G	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	S	D	K	D	G	N	G	Y	I	S	A	A	E	A	S	V	S	P	V	F	A	G	G	V	E	Y	V	I	R	R	R	I	T	P	E	I	A	T	R	L	.	.	.	E	Y	Q	W	T	N	N	A	S	D	N	G	M	L	S	L
Template Known Secondary structure		T		T	T	T													S	S	B						S	S	S						B																S	S	S		S	S	S						.	.	.						S	S	S	S
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		346	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	T	Y	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	S	Y	R	F
Template Known Secondary structure							S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions