Job Description P22188 Confidence 100.00% Date Thu Jan 5 11:38:45 GMT 2012 Rank 12 Aligned Residues 364 % Identity 21% Template c3uagA_ PDB info PDB header:ligase Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d- PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase Resolution 1.77 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	I	A	Q	G	V	A	A	I	I	A	E	A	K	D	E	A	T	D	G	E	I	R	E	M	H	G	V	P	V	I	Y	L	S	Q	L	N	E	R	L	S	A	L	A	G	R	F	Y	H	E	P	S	D	N	L	R	L	V	G	V	T	G	T	N	G	K	T	T	T	T	Q	L	L	A	Q	W	S	Q	L
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	W	L	M	A	A	D	L	I	V	A	S	P	G	I	A	L	A	H	P	S	L	S	A	A	A	D	A	G	I	E	I	V	G	D	I	E	L	F	C	.	.	.	.	.	.	.	.	.	.	R	E	A	Q	A	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A
Template Known Secondary structure						T	T		S						T	T	S		T	T	S									T	T												.	.	.	.	.	.	.	.	.	.					S								S	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.											100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	E	I	S	A	V	M	G	T	V	G	N	G	L	L	G	K	V	I	P	T	E	N	T	T	G	S	A	V	D	V	Q	H	E	L	A	G	L	V	D	Q	G	A	T	F	C	A	M	E	V	S	S	H	G	L	V	Q	H	R	V	A	A	L	K	F	A	A	S	V	F	T	N	L	S	R	D	H	L	D
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		A	G	V	N	V	G	V	G	G	N	I	G	L	P	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	L	D	D	E	C	E	L	Y	V	L	E	L	S	S	F	Q	L	.	.	E	T	T	S	S	L	Q	A	V	A	A	T	I	L	N	V	T	E	D	H	M	D
Template Known Secondary structure		T	T								T	T	S	S		G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G			T	T														.	.		T							S									S			G	G
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.																						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	G	D	M	E	H	Y	E	A	A	K	W	L	L	Y	S	E	H	H	C	G	Q	A	I	I	N	A	D	D	E	V	G	R	R	W	L	A	K	L	P	D	A	V	A	V	S	M	E	D	H	I	N	P	N	C	H	G	R	W	L	K	A	T	E	V	N	Y	H	D	S	G	A	T	I	R	F	S	S	S
Query Conservation
Alig confidence																			.	.																		.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.																		.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Y	P	F	G	L	Q	Q	Y	R	A	A	L	R	I	Y	E	.	.	N	A	K	V	C	V	V	N	A	D	D	A	L	T	M	P	I	.	.	.	.	.	E	R	C	V	S	F	G	V	N	M	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	H	L	N	H	E	T	W	L	R	V	K	G	E
Template Known Secondary structure		G		T	T										G	G	G	T	.	.	T		S						T	T		G	G	G				.	.	.	.	.								S	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T
Template Predicted Secondary structure																			.	.																		.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.	.	.	.	.	230	.														.	.	.	.	.	.	.	.	240	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		W	G	D	G	E	I	E	S	H	L	M	G	A	F	N	V	S	N	L	L	L	A	L	A	T	L	L	A	L	G	Y	P	L	A	D	L	L	K	T	A	A	R	L	Q	P	V	C	G	R	M	E	V	F	T	A	P	G	K	P	T	V	V	V	D	.	Y	A	H	T	P	D	A	L	E	K	A	L	Q	A	A
Query Conservation																																																																		.
Alig confidence																																																																		.
Template Conservation
Template Sequence		K	V	L	N	V	K	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L	P	R	A	S	S	L	K	A	L	T	T	F	T	G	L	P	H	R	F	E	V	V	L	E	H	N	G	V	R	W	I	N	D	S	K	A	T	N	V	G	S	T	E	A	A	L	N	G	L
Template Known Secondary structure						G	G	G		S			S																	T	T																	T	T	S	S							T	T							T	T			S									T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	H	C	A	G	K	L	W	C	V	F	G	C	G	G	D	R	D	K	G	K	R	P	L	M	G	A	I	A	E	E	F	A	D	V	A	V	V	T	D	D	N	P	R	T	E	E	P	R	A	I	I	N	D	I	L	A	G	M	L	D	A	G	H	A	K	V	M	E	G	R	A	E	A	V	T	C	A	V
Query Conservation
Alig confidence			.	.											.											.																.	.	.	.	.										.	.	.	.	.	.
Template Conservation			.	.											.											.																.	.	.	.	.										.	.	.	.	.	.
Template Sequence		H	.	.	V	D	G	T	L	H	L	L	L	G	.	G	D	G	K	S	A	D	F	S	P	.	L	A	R	Y	L	N	G	D	N	V	R	L	Y	C	F	.	.	.	.	.	G	R	D	G	A	Q	L	A	A	.	.	.	.	.	.	L	R	P	E	V	A	E	Q	T	E	T	M	E	Q	A	M	R	L	L	A
Template Known Secondary structure			.	.		S	S								.	S	B		T	T				G	G	.	G	G	G	G	S		S	T	T							.	.	.	.	.	S	T	T						T	.	.	.	.	.	.	T	S	G	G	G					S	S									G
Template Predicted Secondary structure			.	.											.											.																.	.	.	.	.										.	.	.	.	.	.
Template SS confidence
		334			.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.						370	.	.	.	.	.	.	.	.							.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.		.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		M	Q	A	K	E	N	D	V	V	L	V	A	.	G	K	G	H	E	D	Y	Q	I	V	G	N	Q	R	L	D	Y	S	D	R	V	T	V	A	R	L	L	G	V	I
Query Conservation														.
Alig confidence														.							.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.
Template Sequence		P	R	V	Q	P	G	D	M	V	L	L	S	P	A	C	A	S	L	D	.	.	.	.	.	.	.	.	.	Q	F	K	N	F	E	Q	R	G	N	E	F	A	R	L
Template Known Secondary structure		G	G			T	T								S	S	B	S	T	T	.	.	.	.	.	.	.	.	.	T	S	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.										.	.	420	.	.	.	.	.	.	.	.	.	430	.	.