Job Description P22188 Confidence 100.00% Date Thu Jan 5 11:38:45 GMT 2012 Rank 5 Aligned Residues 410 % Identity 20% Template c3lk7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase; PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a Resolution 1.50 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90										.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.
Query Sequence		L	R	E	M	T	L	D	S	R	V	A	A	A	G	D	L	F	V	A	V	V	G	H	Q	A	D	G	R	R	Y	I	P	Q	A	I	A	Q	G	V	A	A	I	I	A	E	A	K	D	E	A	T	D	G	E	I	R	E	M	H	G	V	P	V	I	Y	L	S	Q	L	.	.	.	.	.	.	.	.	.	N	E
Query Conservation																																																																							.	.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.
Template Sequence		R	S	G	E	A	A	A	R	L	L	A	K	L	G	A	I	V	T	V	N	D	G	K	P	F	D	E	N	P	T	A	Q	S	L	L	E	E	G	I	K	V	V	C	G	S	H	P	L	E	L	L	D	E	D	F	.	.	.	.	.	.	.	C	Y	X	I	K	N	P	G	I	P	Y	N	N	P	X	V	K	K
Template Known Secondary structure		T	T											T	T								S	S		G	G	G										T	T						S				G	G	G	G	G	S			.	.	.	.	.	.	.							T	T	S		T	T	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.								.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		93	.	.	.					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		R	L	S	A	.	.	.	.	L	A	G	R	F	Y	H	E	P	S	D	N	L	R	L	V	G	V	T	G	T	N	G	K	T	T	T	T	Q	L	L	A	Q	W	S	Q	L	L	G	E	I	S	A	V	M	G	T	V	G	N	G	L	L	G	K	V	I	P	T	E	N	T	T	G	S	A	V	D	V	Q	H	E
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	E	K	Q	I	P	V	L	T	E	V	E	L	A	Y	L	V	S	E	S	Q	L	I	G	I	T	G	S	N	G	K	T	T	T	T	T	X	I	A	E	V	L	N	A	G	G	Q	R	G	L	L	A	G	N	I	G	F	P	A	S	E	V	V	Q	A	A	N	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T																S								S	S																T	T								T	S	S	S						T	T	T			.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		L	A	G	L	V	D	Q	G	A	T	F	C	A	M	E	V	S	S	H	G	L	V	Q	H	R	V	A	A	L	K	F	A	A	S	V	F	T	N	L	S	R	D	H	L	D	Y	H	G	D	M	E	H	Y	E	A	A	K	W	L	L	Y	S	.	E	H	H	C	G	Q	A	I	I	N	A	D	D	E	V	G	R
Query Conservation																																																																.
Alig confidence		.	.	.	.	.	.	.															.	.																																								.
Template Conservation		.	.	.	.	.	.	.															.	.
Template Sequence		.	.	.	.	.	.	.	D	K	D	T	L	V	X	E	L	S	S	F	Q	L	.	.	X	G	V	K	E	F	R	P	H	I	A	V	I	T	N	L	X	P	T	H	L	D	Y	H	G	S	F	E	D	Y	V	A	A	K	W	N	I	Q	N	Q	X	S	S	S	D	F	L	V	L	N	F	N	Q	G	I	S	K
Template Known Secondary structure		.	.	.	.	.	.	.	T	T													.	.	T	T		S	S				S									S							S	S										G	G	G	T	T			T	T	S						T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.															.	.
Template SS confidence
									160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	W	L	A	K	L	P	D	A	V	A	V	S	M	E	D	H	I	N	P	N	C	H	G	R	W	L	K	A	T	E	V	N	Y	H	D	S	G	A	T	I	R	F	S	S	S	W	G	D	G	E	I	E	S	H	L	M	G	A	F	N	V	S	N	L	L	L	A	L	A	T	L	L	A	L	G	Y	P	L	A
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	A	K	T	T	K	A	T	I	V	P	F	S	T	T	E	K	V	D	G	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	V	Q	D	K	Q	L	F	Y	K	G	E	N	I	X	S	V	D	D	I	G	V	P	G	S	H	N	V	E	N	A	L	A	T	I	A	V	A	K	L	A	G	I	S	N	Q
Template Known Secondary structure					T	T		S	S							S	S	S			S	S	.	.	.	.	.	.	.	.	.	.	.	.					T	T					T	T						G	G	G	S	S	S		S																		T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.													.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		D	L	L	K	T	A	A	R	L	Q	P	V	C	G	R	M	E	V	F	T	A	P	G	K	P	T	V	V	V	D	.	Y	A	H	T	P	D	A	L	E	K	A	L	Q	A	A	R	L	H	C	A	G	K	L	W	C	V	F	G	C	G	G	D	R	D	K	G	K	R	P	L	M	G	A	I	A	E	E	F	A
Query Conservation																																.
Alig confidence																																.														.	.	.													.	.
Template Conservation																																														.	.	.													.	.
Template Sequence		V	I	R	E	T	L	S	N	F	G	G	V	K	H	R	L	Q	S	L	G	K	V	H	G	I	S	F	Y	N	D	S	K	S	T	N	I	L	A	T	Q	K	A	L	S	.	.	.	G	F	D	N	T	K	V	I	L	I	A	G	.	.	G	L	D	R	G	N	E	F	D	E	L	I	P	D	I	T	G	L	K
Template Known Secondary structure														T	T	S	S							T	T							T	T			S										.	.	.	T	S		G	G	G							.	.		S			S				G	G	G					T	T		S
Template Predicted Secondary structure																																														.	.	.													.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	V	A	V	V	T	D	D	N	P	R	T	E	E	P	R	A	I	I	N	D	I	L	A	G	M	L	D	A	G	H	A	K	V	M	E	G	R	A	E	A	V	T	C	A	V	M	Q	A	K	E	N	D	V	V	L	V	A	G	K	G	H	E	D	Y	Q	I	V	G	N	Q	R	L	D	Y	S	D	R	.	.
Query Conservation																																																																																.	.
Alig confidence							.	.	.	.	.	.																		.	.	.																																		.	.	.	.	.										.	.
Template Conservation							.	.	.	.	.	.																		.	.	.																																		.	.	.	.	.
Template Sequence		H	X	V	V	L	.	.	.	.	.	.	G	E	S	A	S	R	V	K	R	A	A	Q	K	A	G	V	T	.	.	.	Y	S	D	A	L	D	V	R	D	A	V	H	K	A	Y	E	V	A	Q	Q	G	D	V	I	L	L	S	P	A	N	A	S	W	.	.	.	.	.	D	X	Y	K	N	F	E	V	R	G	D
Template Known Secondary structure							.	.	.	.	.	.	S	T	T											T	T			.	.	.					S	S														T	T								S	S		S	T	.	.	.	.	.	T	T	S	S	S
Template Predicted Secondary structure							.	.	.	.	.	.																		.	.	.																																		.	.	.	.	.
Template SS confidence
		374	.	.	.	.							.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.				.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.						.	430	.	.	.	.	.	.	.	.	.
					485	.	.	.	.	490
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	V	T	V	A	R	L
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		E	F	I	D	T	F	E	S	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		440	.	.	.	.	.	.	.	.