Job Description P22188 Confidence 93.92% Date Thu Jan 5 11:38:45 GMT 2012 Rank 65 Aligned Residues 82 % Identity 18% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.														.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	S	D	N	L	R	L	V	G	V	T	G	T	N	.	.	G	K	T	T	T	T	Q	L	L	A	Q	W	S	Q	L	L	G	E	I	S	A	V	M	G	T	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	L	L	G	K	V	I	P	T	E	N	T	T	G	S	A	V	D	V	Q	H	E
Query Conservation																	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	K	E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G
Template Known Secondary structure					S	S	S									T	T	S	S														T	T	T											S	S	T											G	G	G	T							T	T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	L	V	D	Q	G	A	T	F	C	A	M	E	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A
Template Known Secondary structure								T	T		S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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