Job Description P22188 Confidence 100.00% Date Thu Jan 5 11:38:45 GMT 2012 Rank 2 Aligned Residues 421 % Identity 38% Template c2wtzC_ PDB info PDB header:ligase Chain: C: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate- PDBTitle: mure ligase of mycobacterium tuberculosis Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.						.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		M	A	D	R	N	L	R	D	L	L	A	P	.	.	.	.	.	W	V	P	D	A	P	S	R	A	L	R	E	M	T	L	D	S	R	V	A	A	A	G	D	L	F	V	A	V	V	G	H	Q	A	D	G	R	R	Y	I	P	Q	A	I	A	Q	G	V	A	A	I	I	A	E	A	K	D	E	A	T	D	G	E
Query Conservation														.	.	.	.	.
Alig confidence			.											.	.	.	.	.																																																														.	.
Template Conservation			.																																																																													.	.
Template Sequence		V	.	G	V	R	L	A	A	L	A	D	Q	V	G	A	A	L	A	E	G	V	T	E	D	R	T	V	T	G	V	T	L	R	A	Q	D	V	S	P	G	D	L	F	A	A	L	T	G	S	T	T	H	G	A	R	H	V	G	D	A	I	A	R	G	A	V	A	V	L	T	D	P	A	G	V	A	E	I	.	.
Template Known Secondary structure			.											T	T				S				T	T	T								S		G	G	G			T	T							B		S	S		B	G	G	G	G							T	T															.	.
Template Predicted Secondary structure			.																																																																													.	.
Template SS confidence
		32		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	E	M	H	G	V	P	V	I	Y	L	S	Q	L	N	E	R	L	S	A	L	A	G	R	F	Y	H	E	P	S	D	N	L	R	L	V	G	V	T	G	T	N	G	K	T	T	T	T	Q	L	L	A	Q	W	S	Q	L	L	G	E	I	S	A	V	M	G	T	V	G	N	G	L	L	G	K	V	I	P	T
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	A	G	R	A	A	V	P	V	L	V	H	P	A	P	R	G	V	L	G	G	L	A	A	T	V	Y	G	H	P	S	E	R	L	T	V	I	G	I	T	G	T	S	G	K	T	T	T	T	Y	L	V	E	A	G	L	R	A	A	G	R	V	A	G	L	I	G	T	I	G	I	R	V	G	G	A	D	L	P	S
Template Known Secondary structure		.		S			S	S						S	S	S												T	T		G	G	G	S	S							S	S	S																T	T							S	S	S					T	T
Template Predicted Secondary structure		.
Template SS confidence
			114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		E	N	T	T	G	S	A	V	D	V	Q	H	E	L	A	G	L	V	D	Q	G	A	T	F	C	A	M	E	V	S	S	H	G	L	V	Q	H	R	V	A	A	L	K	F	A	A	S	V	F	T	N	L	S	R	D	H	L	D	Y	H	G	D	M	E	H	Y	E	A	A	K	W	L	L	Y	S	.	.	E	H	H
Query Conservation																																																																													.	.
Alig confidence																																																																													.	.
Template Conservation
Template Sequence		A	L	T	T	P	E	A	P	T	L	Q	A	M	L	A	A	M	V	E	R	G	V	D	T	V	V	M	E	V	S	S	H	A	L	A	L	G	R	V	D	G	T	R	F	A	V	G	A	F	T	N	L	S	R	D	H	L	D	F	H	P	S	M	A	D	Y	F	E	A	A	S	L	F	D	P	D	S	A	L	R
Template Known Secondary structure		S	S	S	S																T	T																T	T	T	T	T				S									S			T	T	T	S	S	S									T	T	T		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		C	G	Q	A	I	I	N	A	D	D	E	V	G	R	R	W	L	A	K	L	P	D	A	V	A	V	S	M	E	D	H	I	N	P	N	C	H	G	R	W	L	K	A	T	E	V	N	Y	H	D	S	G	A	T	I	R	F	S	S	.	.	S	W	G	D	G	E	I	E	S	H	L	M	G	A	F	N	V	S	N
Query Conservation																																																													.	.
Alig confidence																																			.	.	.	.	.	.																					.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		A	R	T	A	V	V	C	I	D	D	D	A	G	R	A	M	A	A	R	A	A	D	A	I	T	V	S	A	A	D	R	P	A	.	.	.	.	.	.	H	W	R	A	T	D	V	A	P	T	D	A	G	G	Q	Q	F	T	A	I	D	P	A	G	V	G	H	H	I	G	I	R	L	P	G	R	Y	N	V	A	N
Template Known Secondary structure			S							S	S											S	S						S	S	S	S			.	.	.	.	.	.	S										T	T	T									T	T	S								S			S
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.							.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	L	A	L	A	T	L	L	A	L	G	Y	P	L	A	D	L	L	K	T	A	A	R	L	Q	P	V	C	G	R	M	E	V	F	T	A	P	G	K	P	T	V	V	V	D	Y	A	H	T	P	D	A	L	E	K	A	L	Q	A	A	R	L	H	C	A	G	K	L	W	C	V	F	G	C	G	G	D	R	D
Query Conservation
Alig confidence																												.							.	.	.	.	.																									.	.	.	.									.	.	.	.	.	.
Template Conservation																												.							.	.	.	.	.																									.	.	.	.									.	.	.	.	.	.
Template Sequence		C	L	V	A	L	A	I	L	D	T	V	G	V	S	P	E	Q	A	V	P	G	L	R	E	I	R	.	V	P	G	R	L	E	.	.	.	.	.	Q	G	F	L	A	L	V	D	Y	A	H	K	P	E	A	L	R	S	V	L	T	T	L	A	.	.	.	.	H	R	L	A	V	V	F	R	.	.	.	.	.	.
Template Known Secondary structure												T	T															.		T	T	S	S	B	.	.	.	.	.												S										T	T		.	.	.	.									.	.	.	.	.	.
Template Predicted Secondary structure																												.							.	.	.	.	.																									.	.	.	.									.	.	.	.	.	.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.						380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.					.	.	.	.	.	.	410	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	K	R	P	L	M	G	A	I	A	E	E	F	A	D	V	A	V	V	T	D	D	N	P	R	T	E	E	P	R	A	I	I	N	D	I	L	A	G	M	L	D	A	G	H	A	K	V	M	E	G	R	A	E	A	V	T	C	A	V	M	Q	A	K	E	N	D	V	V	L	V	A	G	K	G	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.															.	.	.	.	.	.	.											.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.															.	.	.	.	.	.	.											.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	A	P	M	G	R	I	A	D	L	V	V	V	T	D	.	.	.	.	.	.	.	P	T	A	I	R	R	E	I	L	A	.	.	.	.	.	.	Q	V	V	E	I	A	D	R	R	D	A	I	R	H	A	V	A	W	A	R	P	G	D	V	V	L	I	A	G	K	G	H
Template Known Secondary structure		.	.	.	.	.	.	.	.															.	.	.	.	.	.	.											.	.	.	.	.	.							S														T	T							S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.															.	.	.	.	.	.	.											.	.	.	.	.	.
Template SS confidence
										430	.	.	.	.	.	.	.	.	.	440	.	.	.								.	.	.	.	.	.	450	.	.	.							.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.