Job Description P22188 Confidence 96.58% Date Thu Jan 5 11:38:45 GMT 2012 Rank 35 Aligned Residues 112 % Identity 16% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		L	V	G	V	T	G	T	N	G	K	T	T	T	T	Q	L	L	A	Q	W	S	Q	L	L	G	E	I	S	A	V	M	G	T	V	G	N	G	L	L	G	K	V	I	P	T	E	N	T	T	G	S	A	V	D	V	Q	H	E	L	A	G	L	V	D	Q	G	A	T	F	C	A	M	E	V	S	S	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence								.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation								.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	G	L	Q	G	.	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I
Template Known Secondary structure					S	T	T	.	S	S															T	T											S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.													T										S
Template Predicted Secondary structure								.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.															.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
			187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	H	G	L	V	Q	H	R	V	A	A	L	K	F	A	A	S	V	F	T	N	L	S	R	D	H	L	D	Y	H	G	D	M	E	H	Y	E	A	A	K	W	L	L	Y	S	E	H	H	C	G	Q	A	I	I	N	A	D
Query Conservation		.
Alig confidence		.																												.	.	.	.	.
Template Conservation																														.	.	.	.	.
Template Sequence		I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	.	.	.	.	.	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D
Template Known Secondary structure													T	T													T	T		.	.	.	.	.																	S
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions