Job Description P22188 Confidence 100.00% Date Thu Jan 5 11:38:45 GMT 2012 Rank 6 Aligned Residues 369 % Identity 20% Template c2f00A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc Resolution 2.50 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		Q	G	V	A	A	I	I	A	E	A	K	D	E	A	T	D	G	E	I	R	E	M	.	.	H	G	V	P	V	I	Y	L	S	Q	L	N	E	R	L	S	A	L	A	G	R	F	Y	H	E	P	S	D	N	L	R	L	V	G	V	T	G	T	N	G	K	T	T	T	T	Q	L	L	A	Q	W	S	Q	L	L	G
Query Conservation																								.	.
Alig confidence																								.	.							.	.	.											.	.	.	.	.	.	.	.
Template Conservation																																.	.	.											.	.	.	.	.	.	.	.
Template Sequence		R	D	A	S	V	V	V	V	S	S	A	I	S	A	D	N	P	E	I	V	A	A	H	E	A	R	I	P	V	I	.	.	.	R	R	A	E	X	L	A	E	L	X	.	.	.	.	.	.	.	.	R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T	T	T	A	X	V	S	S	I	Y	A	E	A	G
Template Known Secondary structure		T	T		S						T	T			T	T										T	T					.	.	.											.	.	.	.	.	.	.	.	T	T	S							S	S	S																T	T
Template Predicted Secondary structure																																.	.	.											.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.									.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	S	A	V	M	G	T	V	G	N	G	L	L	G	K	V	I	P	T	E	N	T	T	G	S	A	V	D	V	Q	H	E	L	A	G	L	V	D	Q	G	A	T	F	C	A	M	E	V	S	S	H	G	L	V	Q	H	R	V	A	A	L	K	F	A	A	S	V	F	T	N	L	S	R	D	H	L	D	Y	H
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		L	D	P	T	F	V	N	G	G	L	V	K	A	A	G	V	H	A	R	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	R	Y	L	I	A	E	A	D	E	S	D	A	.	.	.	S	F	L	H	L	Q	P	X	V	A	I	V	T	N	I	E	A	D	H	X	D	T	Y
Template Known Secondary structure													T	T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S									T	T	S	.	.	.	G	G	G	G				S									S		S	G	G	G	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.																				.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
			216	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure		.																.
Query SS confidence		.																.
Query Sequence		.	G	D	M	E	H	Y	E	A	A	K	W	L	L	Y	S	.	E	H	H	C	G	Q	A	I	I	N	A	D	D	E	V	G	R	R	W	L	A	K	L	P	D	A	V	A	V	S	M	E	D	H	I	N	P	N	C	H	G	R	W	L	K	A	T	E	V	N	Y	H	D	S	G	A	T	I	R	F	S	S	S
Query Conservation		.																.
Alig confidence		.																.																																					.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.
Template Sequence		Q	G	D	F	E	N	L	K	Q	T	F	I	N	F	L	H	N	L	P	F	Y	G	R	A	V	X	C	V	D	D	P	V	I	R	E	L	L	P	R	V	G	R	Q	T	T	T	Y	G	F	S	E	D	A	.	.	.	.	.	.	D	V	R	V	E	D	Y	Q	Q	I	G	P	Q	G	H	F	T	L	L	R	Q
Template Known Secondary structure		T	T														T	T	S		T	T							T	T	S							G	G	G			S							S	S	T	T		.	.	.	.	.	.	S										T	T									T
Template Predicted Secondary structure																																																							.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.							.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		294	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.										.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure						.																																																			.	.	.	.	.	.	.	.	.
Query SS confidence						.																																																			.	.	.	.	.	.	.	.	.
Query Sequence		W	G	D	G	.	E	I	E	S	H	L	M	G	A	F	N	V	S	N	L	L	L	A	L	A	T	L	L	A	L	G	Y	P	L	A	D	L	L	K	T	A	A	R	L	Q	P	V	C	G	R	M	E	V	F	T	.	.	.	.	.	.	.	.	.	A	P	G	K	P	T	V	V	V	D	Y	A	H	T	P	D
Query Conservation						.																																																			.	.	.	.	.	.	.	.	.
Alig confidence						.																																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	K	E	P	X	R	V	T	L	N	A	P	G	R	H	N	A	L	N	A	A	A	A	V	A	V	A	T	E	E	G	I	D	D	E	A	I	L	R	A	L	E	S	F	Q	G	T	G	R	R	F	D	F	L	G	E	F	P	L	E	P	V	N	G	K	S	G	T	A	X	L	V	D	D	Y	G	H	H	P	T
Template Known Secondary structure		T	S								S	S		S																		T												T				B	T	T	S	S								S	S	S	S	S	S		S	S											S
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		A	L	E	K	A	L	Q	A	A	R	L	H	C	A	G	K	.	L	W	C	V	F	G	C	G	G	D	R	D	K	G	K	R	P	L	M	G	A	I	A	E	E	F	A	D	V	A	V	V	T	D	D	N	P	R	T	E	E	P	R	A	I	I	N	D	I	L	A	G	M	L	D	A	G	H	A	K	V	M	E
Query Conservation																		.
Alig confidence																		.																																																								.	.	.
Template Conservation																																																																										.	.	.
Template Sequence		E	V	D	A	T	I	K	A	A	R	A	G	W	P	D	K	N	L	V	X	L	F	Q	P	H	R	F	T	R	T	R	D	L	Y	D	D	F	A	N	V	L	T	Q	V	D	T	L	L	X	L	E	V	Y	P	A	G	E	A	P	I	P	G	A	D	S	R	S	L	C	R	T	D	.	.	.	P	I	L	V	P
Template Known Secondary structure												T	T			S	S									B						T	T	T									T	T	S	S								B		S	S	S				T	T	S	S					T	T			.	.	.
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.				430	.	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	A	E	A	V	T	C	A	V	M	Q	A	K	E	N	D	V	V	L	V	A	G	K	G	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	A	R	V	A	E	X	L	A	P	V	L	T	G	N	D	L	I	L	V	Q	G	A	G	N
Template Known Secondary structure			S	S							G	G	G			S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.