Job Description P22188 Confidence 100.00% Date Thu Jan 5 11:38:45 GMT 2012 Rank 3 Aligned Residues 434 % Identity 18% Template c2am1A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine-d-glutamyl-lysine-d-alanyl-d- PDBTitle: sp protein ligand 1 Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		M	A	D	R	N	L	R	D	L	L	.	.	A	P	W	V	P	D	A	P	S	R	A	L	R	E	M	T	L	D	S	R	V	A	A	A	G	D	L	F	V	A	V	V	G	H	Q	A	D	G	R	R	Y	I	P	Q	A	I	A	Q	G	V	A	A	I	I	A	E	A	K	D	E	A	T	D	G	E	I	R	E
Query Conservation												.	.
Alig confidence												.	.																																				.																									.	.	.	.	.	.	.	.
Template Conservation																																																	.																									.	.	.	.	.	.	.	.
Template Sequence		L	T	I	H	E	I	A	Q	V	V	G	A	K	N	D	I	S	I	F	E	D	T	Q	L	E	K	A	E	F	D	S	R	L	I	G	T	G	D	L	F	V	P	L	K	G	A	R	.	D	G	H	D	F	I	E	T	A	F	E	N	G	A	A	V	T	L	S	E	K	E	V	S	.	.	.	.	.	.	.	.
Template Known Secondary structure			B									T		S	S		S	T	T	S				B						S		G	G	G			T	T							B	S	S	S	.	B	G	G	G	G								T		S					S	S				.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.																									.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	H	G	V	P	V	I	Y	L	S	Q	L	N	E	R	L	S	A	L	A	G	R	F	Y	H	E	P	S	D	N	L	R	L	V	G	V	T	G	T	N	G	K	T	T	T	T	Q	L	L	A	Q	W	S	Q	L	L	G	E	I	S	A	V	M	G	T	V	G	N	G	L	L	G	K	V	I	P	T	E	N	T
Query Conservation
Alig confidence		.	.																										.	.																																																			.
Template Conservation		.	.																										.	.																																																			.
Template Sequence		.	.	N	H	P	Y	I	L	V	D	D	V	L	T	A	F	Q	S	L	A	S	Y	Y	L	E	K	T	.	.	T	V	D	V	F	A	V	T	G	S	N	G	K	T	T	T	K	D	X	L	A	H	L	L	S	T	R	Y	K	T	Y	K	T	Q	G	N	Y	N	N	E	I	G	L	P	Y	T	V	L	H	X	.
Template Known Secondary structure		.	.	S	S						S																		.	.												S	S	S											T	T	T	S							T	T			S	T	T								T		.
Template Predicted Secondary structure		.	.																										.	.																																																			.
Template SS confidence
				74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		T	G	S	A	V	D	V	Q	H	E	L	A	G	L	V	D	Q	G	A	T	F	C	A	M	E	.	.	V	S	S	H	G	L	V	Q	H	R	V	A	A	L	K	F	A	A	S	V	F	T	N	L	S	R	D	H	L	D	Y	H	G	D	M	E	H	Y	E	A	A	K	W	L	L	Y	S	E	H	H	C	G	Q
Query Conservation																											.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	G	T	E	K	L	V	L	E	X	G	Q	D	H	L	G	D	I	H	L	L	S	E	L	A	R	P	K	T	A	I	V	T	L	V	G	E	A	H	L	A	F	F	K	D	R	S	E	I	A	K	G	K	X	Q	I	A	D	G	X	A	S	G	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T											S	S	T	T												S										S	S		T	T												G	G	G	G	T	T			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	I	N	A	D	D	E	V	G	R	R	W	L	A	K	L	P	D	A	V	A	V	S	M	E	D	H	I	N	P	N	C	H	G	R	W	L	K	A	T	E	V	N	Y	H	D	S	G	A	T	I	R	F	S	S	S	W	G	D	G	E	I	E	S	H	L	M	G	A	F	N	V	S	N	L	L	L	A	L
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.																	.	.
Template Sequence		L	L	L	A	P	A	D	P	I	V	E	D	Y	L	P	I	D	K	K	V	V	R	F	G	.	.	.	.	.	.	.	.	.	Q	G	A	E	L	E	I	T	D	L	V	E	R	K	D	S	.	.	L	T	F	K	A	N	F	L	E	Q	A	L	D	L	P	V	T	G	K	Y	N	A	T	N	A	X	I	A	S
Template Known Secondary structure							S		G	G	G	G	G	G			S	S	S						S	.	.	.	.	.	.	.	.	.	T	T	S	S	B									S	S		.	.						T	T		S	S					S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.																	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.										.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.				.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																											.																						.	.	.
Query SS confidence																																											.																						.	.	.
Query Sequence		A	T	L	L	A	L	G	Y	P	L	A	D	L	L	K	T	A	A	R	L	Q	P	V	C	G	R	M	E	V	F	T	A	P	G	K	P	T	V	V	V	D	.	Y	A	H	T	P	D	A	L	E	K	A	L	Q	A	A	R	L	H	C	A	G	.	.	.	K	L	W	C	V	F	G	C	G	G	D	R	D	K
Query Conservation																																											.																						.	.	.
Alig confidence																																											.																						.	.	.
Template Conservation
Template Sequence		Y	V	A	L	Q	E	G	V	S	E	E	Q	I	R	L	A	F	Q	H	L	E	L	T	R	N	R	T	E	W	K	K	A	A	N	G	A	D	I	L	S	D	V	Y	N	A	N	P	T	A	X	K	L	I	L	E	T	F	S	A	I	P	A	N	E	G	G	K	K	I	A	V	L	A	D	X	K	E	L	G	D
Template Known Secondary structure							T	T										G	G	G								S						T	T	T								S			S												T	T	S				S	S															T
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.					.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.		.	.
Predicted Secondary structure															.	.	.	.																																																													.
Query SS confidence															.	.	.	.																																																													.
Query Sequence		G	K	R	P	L	M	G	A	I	A	E	E	F	.	.	.	.	A	D	V	A	V	V	T	D	D	N	P	R	T	E	E	P	R	A	I	I	N	D	I	L	A	G	M	L	D	A	G	H	A	K	V	M	E	G	R	A	E	A	V	T	C	A	V	M	Q	A	K	E	N	D	V	V	L	V	A	G	.	K	G
Query Conservation															.	.	.	.																																																													.
Alig confidence															.	.	.	.																																																													.
Template Conservation
Template Sequence		Q	S	V	Q	L	H	N	Q	X	I	L	S	L	S	P	D	V	L	D	I	V	I	F	Y	G	E	D	I	A	Q	L	A	Q	L	A	S	Q	X	F	P	I	G	H	V	Y	Y	F	K	K	T	E	D	Q	D	Q	F	E	D	L	V	K	Q	V	K	E	S	L	G	A	H	D	Q	I	L	L	K	G	S	N	S
Template Known Secondary structure		T								G	G	G	G			T	T	T		S							S	T	T											S		T	T							B	S	S	S		B	T														T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
		468	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	D	Y	Q	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	N	L	A	K	L	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		443	.	.	.	.	.	.