Job Description P22188 Confidence 100.00% Date Thu Jan 5 11:38:45 GMT 2012 Rank 11 Aligned Residues 371 % Identity 22% Template c1j6uA_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc; PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution Resolution 2.30 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	R	V	A	A	A	G	D	L	F	V	A	V	V	G	H	Q	A	D	G	R	R	Y	I	P	Q	A	I	A	Q	G	V	A	A	I	I	A	E	A	K	D	E	A	T	D	G	E	I	R	E	M	H	G	V	P	V	I	Y	L	S	Q	L	N	E	R	L	S	A	L	A	G	R	F	Y	H	E	P	S	D
Query Conservation
Alig confidence																						.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation																						.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Sequence		S	A	D	N	W	Y	D	P	D	L	V	I	K	T	P	A	V	R	D	D	.	N	P	E	I	V	R	A	R	X	E	R	V	P	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	L	H	Y	F	R	D	T	L	K	.	.	.	.	.	.	R	E
Template Known Secondary structure			T	T	S					S						T	T			T	T	.										T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Predicted Secondary structure																						.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.																										.	.	90	.	.	.	.	.	.	.	.							.	100
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	R	L	V	G	V	T	G	T	N	G	K	T	T	T	T	Q	L	L	A	Q	W	S	Q	L	L	G	E	I	S	A	V	M	G	T	V	G	N	G	L	L	G	K	V	I	P	T	E	N	T	T	G	S	A	V	D	V	Q	H	E	L	A	G	L	V	D	Q	G	A	T	F	C	A	M	E	V	S	S	H
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	E	E	F	A	V	T	G	T	D	G	K	T	T	T	T	A	X	V	A	H	V	L	K	H	L	R	K	S	P	T	V	F	L	G	G	I	X	D	S	L	E	H	G	N	Y	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	G	P	V	V	Y	E	L	D	E	S
Template Known Secondary structure											S	S	S															T	T								S	S			T	T	S	T	T	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S								T	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.																				150	.	.	.	.	.	.	.	.	.	160	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	V	Q	H	R	V	A	A	L	K	F	A	A	S	V	F	T	N	L	S	R	D	H	L	D	Y	H	G	D	M	E	H	Y	E	A	A	K	W	L	L	Y	S	E	H	H	C	G	Q	A	I	I	N	A	D	D	E	V	G	R	R	W	L	A	K	L	P	D	A	V	A	V	S	M	E	D	H	I	N	P
Query Conservation
Alig confidence			.	.	.																																							.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.																																							.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	.	.	.	E	F	F	S	E	F	S	P	N	Y	L	I	I	T	N	A	R	G	D	H	L	E	N	Y	G	N	S	L	T	R	Y	R	S	A	F	E	K	I	.	S	R	N	T	D	L	V	V	T	F	A	E	D	E	L	T	S	H	L	.	.	.	.	.	.	.	.	.	.	.	.	G	D	V	T	F	G
Template Known Secondary structure		S	.	.	.	G	G	G	G	G				S												G	G	G	G	T	T													.			T		S						T	T		T	T	T	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure			.	.	.																																							.																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.													220	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		N	C	H	G	R	W	L	K	A	T	E	V	N	Y	H	D	S	G	A	T	I	R	F	S	S	S	W	G	D	G	E	I	E	S	H	L	M	G	A	F	N	V	S	N	L	L	L	A	L	A	T	L	L	A	L	G	Y	P	L	A	D	L	L	K	T	A	A	R	L	Q	P	V	C	G	R	M	E	V	F	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		V	K	K	G	T	Y	T	L	E	X	R	S	A	S	R	A	E	Q	K	A	X	V	E	K	N	G	K	R	Y	L	E	L	K	L	K	V	P	G	F	H	N	V	L	N	A	L	A	V	I	A	L	F	D	S	L	G	Y	D	L	A	P	V	L	E	A	L	E	E	F	R	G	V	H	R	R	F	S	I	A	F
Template Known Secondary structure		S	S	S	S	S										S	S									T	T									S	S		S																	T	T																	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
			347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	T	A	P	G	K	P	T	V	V	V	D	Y	A	H	T	P	D	A	L	E	K	A	L	Q	A	A	R	L	H	C	A	G	K	L	W	C	V	F	G	C	G	G	D	R	D	K	G	K	R	P	L	M	G	A	I	A	E	E	F	A	D	V	A	V	V	T	D	D	N	P	R	T	E	E	P	R	A	I	I
Query Conservation		.
Alig confidence		.																																								.	.												.	.	.	.	.
Template Conservation																																										.	.												.	.	.	.	.
Template Sequence		H	D	P	E	T	N	I	Y	V	I	D	D	Y	A	H	T	P	D	E	I	R	N	L	L	Q	T	A	K	E	V	F	E	N	E	K	I	V	V	I	F	.	.	Q	P	H	R	G	N	F	A	K	A	L	.	.	.	.	.	Q	L	A	D	E	V	V	V	T	E	V	Y	D	S	G	K	X	I	W	D	S	L
Template Known Secondary structure				T	T	T	T										S																S	S	S							.	.			B									.	.	.	.	.	T	T	S	S								B
Template Predicted Secondary structure																																										.	.												.	.	.	.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.	.	.	.	.						.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	I	L	A	G	M	L	D	A	G	H	A	K	V	M	E	G	R	A	E	A	V	T	C	A	V	M	Q	A	K	E	N	D	V	V	L	V	A	G	K	G	H	E	D	Y	Q	I	V	G	N	Q	R	L	D	Y	S	D	R	V	T	V	A	R	L	L	G	V	I
Query Conservation
Alig confidence			.	.	.	.	.	.																				.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.																				.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	.	.	.	.	.	.	S	L	G	K	E	A	Y	F	V	E	K	L	P	E	L	E	K	V	I	.	.	S	V	S	E	N	T	V	F	L	F	V	G	A	G	D	I	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	S	R	R	F	V	E	R	Y
Template Known Secondary structure			.	.	.	.	.	.		T	T								S	G	G	G						.	.				S	S								S	S	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.																				.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		396							.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.			.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.															.	.	.	.	.	.	.	440	.	.