Job Description P22188 Confidence 100.00% Date Thu Jan 5 11:38:45 GMT 2012 Rank 4 Aligned Residues 417 % Identity 21% Template c1gg4A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamyl-2,6- PDBTitle: crystal structure of escherichia coli udpmurnac-tripeptide2 d-alanyl-d-alanine-adding enzyme (murf) at 2.3 angstrom3 resolution Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		R	N	L	R	D	L	L	A	P	W	V	P	D	.	.	A	P	S	R	A	L	R	E	M	T	L	D	S	R	V	A	A	A	G	D	L	F	V	A	V	V	G	H	Q	A	D	G	R	R	Y	I	P	Q	A	I	A	Q	G	V	A	A	I	I	A	E	A	K	D	E	A	T	D	G	E	I	R	E	M	H	G
Query Conservation															.	.
Alig confidence															.	.																																																									.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		V	T	L	S	Q	L	T	D	I	L	N	G	E	L	Q	G	A	D	I	T	L	D	A	V	T	T	D	T	R	K	L	T	P	G	C	L	F	V	A	L	K	G	E	R	F	D	A	H	D	F	A	D	Q	A	K	A	G	G	A	G	A	L	L	V	S	R	P	L	D	I	D	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T					S						S				S		G	G	G			T	T							B		S	S		B	T	T	T	T							T	T							S	S			S		S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	V	I	Y	L	S	Q	L	N	E	R	L	S	A	L	A	G	R	F	Y	H	E	P	S	D	N	L	R	L	V	G	V	T	G	T	N	G	K	T	T	T	T	Q	L	L	A	Q	W	S	Q	L	L	G	E	I	S	A	V	M	G	T	V	G	N	G	L	L	G	K	V	I	P	T	E	N	T	T	G	S
Query Conservation
Alig confidence																						.	.																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	P	Q	L	I	V	K	D	T	R	L	A	F	G	E	L	A	A	W	V	.	.	R	Q	Q	V	P	A	R	V	V	A	L	T	G	S	S	G	K	T	S	V	K	E	X	T	A	A	I	L	S	Q	C	G	N	T	L	Y	T	A	G	N	L	N	N	D	I	G	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S						S														.	.				S										S	S														T	T	T	S							T	T			S	T	T		.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.																																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		A	V	D	V	Q	H	E	L	A	G	L	V	D	Q	G	A	T	F	C	A	M	E	V	S	S	H	G	L	V	Q	H	R	V	A	A	L	K	F	A	A	S	V	F	T	N	L	S	R	D	H	L	D	Y	H	G	D	M	E	H	Y	E	A	A	K	W	L	L	Y	S	.	E	H	H	C	G	Q	A	I	I	N
Query Conservation																																																																							.
Alig confidence		.	.																																													.	.	.	.	.	.	.	.																.
Template Conservation		.	.																																													.	.	.	.	.	.	.	.
Template Sequence		.	.	V	P	X	T	L	L	R	L	T	P	E	Y	D	Y	A	V	I	E	L	G	A	N	H	Q	G	E	I	A	W	T	V	S	L	T	R	P	E	A	A	L	V	N	N	L	.	.	.	.	.	.	.	.	A	S	L	A	G	V	A	K	A	K	G	E	I	F	S	G	L	P	E	N	G	I	A	I	X	N
Template Known Secondary structure		.	.						T	T			T	T		S									S	S	S	S												S								.	.	.	.	.	.	.	.												G	G	G	G	G			T	T
Template Predicted Secondary structure		.	.																																													.	.	.	.	.	.	.	.
Template SS confidence
				141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.									.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	D	E	V	G	R	R	W	L	A	K	L	P	D	A	V	A	V	S	M	E	D	H	I	N	P	N	C	H	G	R	W	L	K	A	T	E	V	N	Y	H	D	S	G	A	T	I	R	F	S	S	S	W	G	D	G	E	I	E	S	H	L	M	G	A	F	N	V	S	N	L	L	L	A	L	A	T	L	L
Query Conservation
Alig confidence																													.	.	.	.
Template Conservation																													.	.	.	.
Template Sequence		A	D	N	N	D	W	L	N	W	Q	S	V	I	G	S	R	K	V	W	R	F	S	P	N	A	A	N	.	.	.	.	S	D	F	T	A	T	N	I	H	V	T	S	H	G	T	E	F	T	L	Q	T	P	T	G	S	V	D	V	L	L	P	L	P	G	R	H	N	I	A	N	A	L	A	A	A	A	L	S	X
Template Known Secondary structure		T	T	B											T	T	S							S	S		T	T	.	.	.	.		S	B									S	S	S								T	T									S	S	S	T
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.			.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																							.																															.	.
Query SS confidence																																							.																															.	.
Query Sequence		A	L	G	Y	P	L	A	D	L	L	K	T	A	A	R	L	Q	P	V	C	G	R	M	E	V	F	T	A	P	G	K	P	T	V	V	V	D	.	Y	A	H	T	P	D	A	L	E	K	A	L	Q	A	A	R	L	H	C	A	G	K	L	W	C	V	F	G	C	G	.	.	G	D	R	D	K	G	K	R	P	L
Query Conservation																																							.																															.	.
Alig confidence																																							.																															.	.
Template Conservation
Template Sequence		S	V	G	A	T	L	D	A	I	K	A	G	L	A	N	L	K	A	V	P	G	R	L	F	P	I	Q	L	A	E	N	Q	L	L	L	D	D	S	Y	N	A	N	V	G	S	X	T	A	A	V	Q	V	L	A	E	X	P	G	Y	R	V	L	V	V	G	D	X	A	E	L	G	A	E	S	E	A	C	H	V	Q
Template Known Secondary structure			T	T											T	T					T	T	S	S							T	T								S																	S	S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		398	.	400	.	.	.	.	.		.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		M	G	A	I	A	E	E	F	.	A	D	V	A	V	V	T	D	D	N	P	R	T	E	E	P	R	A	I	I	N	D	I	L	A	G	M	L	D	A	G	H	A	K	V	M	E	G	R	A	E	A	V	T	C	A	V	M	Q	A	K	E	N	D	V	V	L	V	A	G	K	G	H	E
Query Conservation										.
Alig confidence										.													.	.	.	.	.	.	.	.	.									.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.									.	.	.
Template Sequence		V	G	E	A	A	K	A	A	G	I	D	R	V	L	S	V	G	K	Q	S	H	.	.	.	.	.	.	.	.	.	A	I	S	T	A	S	G	V	.	.	.	G	E	H	F	A	D	K	T	A	L	I	T	R	L	K	L	L	I	A	E	Q	Q	V	I	T	I	L	V	K	G	S	R
Template Known Secondary structure										T		S						S	S	S	T		.	.	.	.	.	.	.	.	.						T	T	S	.	.	.					S	S																S	S									G
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.									.	.	.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.										.	.	.	.	400	.	.	.				.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.