 |
Job Description | P33602 | Confidence | 87.71% | Date | Thu Jan 5 11:52:24 GMT 2012 |
Rank | 186 | Aligned Residues | 109 |
% Identity | 11% | Template | d1zpda1 |
SCOP info | DHS-like NAD/FAD-binding domain
| DHS-like NAD/FAD-binding domain
| Pyruvate oxidase and decarboxylase, middle domain
|
Resolution | 1.86 |
|
 |
  |   |
296 | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | |
|
|
|
. | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | |
. | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | Q | A | M | Q | G | A | A | D | I | L | R | Q | S | K | K | V | I | G | I | G | S | P | R | A | S | . |
. |
. |
. |
V | E | S | N | F | A | L | R | E | L | V | G | E | E | N | F | Y | T | G | I | A | H | G | E | Q | E | R | L | Q | L | A | L | K | V | L | . |
R | E | G | G | I | Y | T | P | A | L | R | E | I | E |
Query Conservation |   |
|
|
|
|   |   |
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
| . | . | . | . |   |
|   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |   |   |   |   |
|   |   |
|   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |   |   |
|
|   |
|
|   |   |
|
|
|   |
|   |
|   |
|
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
N | A | A | V | D | E | T | L | K | F | I | A | N | R | D | K | V | A | V | L | V | G | S | K | L | R | A | A | G | A | E | E | A | A | V | K | F | T | D | A | L | G | G | A | V | A | T | M | A | A | A | K | S | F | F | P | E | E | N | A | L | Y | I | G | T | S | W | G | E | V | S | Y | P | G | V | E | K | T | M | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T | T |
| S |
|  |  |  |  |  |
| T | T | T | T | T | T | T |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | G | G | G | T | T | S | S |
| T | T | S | T | T |  |  |  |  |  |
| G | G | G | S |
| T | T |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
196 | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . |
  |
  |   |
371 | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | Y | D | A | V | L | V | L | G | E | D | V | T | Q | T | G | A | R | V | A | L | A | V | R | Q | A | V | K | G | K | A | R | E | M | A | A | A | Q |
Query Conservation |   |
  |
|
|   |
|
|   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|   |
|
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |
|   |
|   |   |
Template Sequence |   |
E | A | D | A | V | I | A | L | A | P | V | F | N | D | Y | S | T | T | G | W | T | D | I | P | . |
. |
. |
. |
D | P | K | K | L | V | L | A | E | P |
Template Known Secondary structure |   |
 |
| S |  |  |  |  |  | S |
|
|
|
| T | T | T | T | T | T | T | T |
|
|
| . | . | . | . |
| G | G | G |  |  |  |  |
| S |
Template Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
276 | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | |
|
|
|
300 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|