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Job DescriptionP33602
Confidence100.00%DateThu Jan 5 11:52:24 GMT 2012
Rank23Aligned Residues443
% Identity18%Templated1y5ia2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   213......220. ....... .230.........240.........250.........260 .........270.....
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Query Sequence  ERYNRKWDM. . . . . . . . . QFAPSIC. QQCSIGCNISPGERYGELRRIENRYNGTVNHY. . . . . . . FLCDRGRFGYGYVNL
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Template Sequence  LNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYS
Template Known Secondary structure 



GGG

S


SSSS



TT


S



TTS


TT


TGGGGGTS
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   25....30.........40.........50.........60.........70.........80.........90.........100....
 
   276...280..... .. ..290.........300.........310....
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Query Sequence  KDRPRQPVQR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RG. . . . DDFITLNAEQAMQGAADILRQSKKVIG. . .
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Template Sequence  ANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDR
Template Known Secondary structure  TTB

S
TT
SST
TTTTSS


T
GGG
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   105....110.........120.........130.........140.........150.........160.........170.........180....
 
   315....320.........330.........340.........350.........360.........370.........380.........390
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Query Sequence  . . . . IGSPRASVESNFALRELVGEENFYTGIAHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVA
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Template Sequence  VAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDA
Template Known Secondary structure 


GGGST


TTTTT
S
TS
S




TT
SS

SGGG
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   185....190.........200.........210.........220.........230.........240.........250.........260....
 
   391........400.........410.........420.........430.........440.. .......450...
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Query Sequence  LAVRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDI. . . . . . . . . . . AAWTYRAPVED. . . . . .
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Template Sequence  HFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEE
Template Known Secondary structure  GGGT

SS

TSS


TT
TTTS

BSTTB
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   265....270.........280.........290.........300.........310.........320.........330.........340....
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation         
  

 

               

 
  
    
 
  
        
                        
Template Sequence  RDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSLLGSQD
Template Known Secondary structure 
SSS
BGGGBTTGGG

SSGGG
B
BTTS

BTTSGGGTSSS
S

S
SSBBTTT

B

B



TTS
S
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   345....350.........360.........370.........380.........390.........400.........410.........420....
 
   454.....460 ......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QARLGFA. . . . . . . . . . . . . . . . . . IAHALD
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Template Sequence  EIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTP
Template Known Secondary structure 

TT


TTS





SBTTS
TTB

SS

TTSBSSTTS

TT
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   425....430.........440.........450.........460.........470.........480.........490.........500....
 
   467..470.........480.........490. ........500. ........510.........520.........530.........540
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Query Sequence  NSAPAVDGIEPELQSKIDVIVQALA. . GAKKPLIISG. . . . TNAGSLEVIQAAANVAKALKGRGADVGITMIARSVNSMG
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Template Sequence  AWAEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLR
Template Known Secondary structure 


TS

TSTTTT
TTSTT

SS



S
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   505....510.........520.........530.........540.........550.........560.........570.........580....
 
   541 ........550.....
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Query Sequence  L. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GIMGGGSLEEALTE. . . . . . . . . . . . . . .
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Template Conservation     
      
 
         
                       
                     

 
  
     
Template Sequence  PQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTN
Template Known Secondary structure  STTTT
S


TTGGGG



SGGGS
TTS
GGGS
S
TTSS

SS
BSS
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   585....590.........600.........610.........620.........630.........640.........650.........660....
 
   556...560........ .570....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LETGRADAVVVLE. NDLHRH. . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                            
  

   
 
 
   
  
 

       
       
Template Sequence  PLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLG
Template Known Secondary structure  TTSTTS
TSS
BGGG
TTSSSSS

S

TTTTT
SSTT
S




S

TT
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   665....670.........680.........690.........700.........710.........720.........730.........740....
 
   575....580.........590.........600.........610........ .620.........630.........640.....
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Query Sequence  . . . . . . . . ASAIRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDG. TVINNEGRAQRFFQVYDPAYYDSKTVM
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Template Sequence  QQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTSDMHPFIHPLSAAV. . . . . DPAWEA
Template Known Secondary structure  TTT



SSS


SS





SSB

T
SB

TTSS


SSSS

SS.....

STT
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   745....750.........760.........770.........780.........790.........800.........810... ......
 
   646...650.........660
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Query Sequence  LESWRWLHSLHSTLL
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Template Sequence  KSDWEIYKAIAKKFS
Template Known Secondary structure  B
Template Predicted Secondary structure 

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   820.........830....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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