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Job DescriptionP33602
Confidence100.00%DateThu Jan 5 11:52:24 GMT 2012
Rank17Aligned Residues585
% Identity16%Templated1kqfa2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   215....220.. .......230.........240. ........250.........260.........270.........280....
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Query Sequence  YNRKWDMQ. . . FAPSICQQCSIGCNISPGE. . . . . . . RYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQ
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Template Sequence  QARNYKLLRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEY
Template Known Secondary structure 




TTTTS
SSBTT

S
S
TTS


TT
TTTTT


TTT
TTB

S
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   34.....40.........50.........60.........70.........80.........90.........100.........110...
 
   285... .290.........300.........310..... ....320.........330. ........340.
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Query Sequence  RRGD. . DFITLNAEQAMQGAADILRQSKKVIGI. . . . . . . . . . . . . . . . . . GSPRASVESNFALREL. . . VGEENFYTGI
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Template Sequence  RAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQA
Template Known Secondary structure 
TT
SS




TTS
B
S

TTS
TTB


GG
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   114.....120.........130.........140.........150.........160.........170.........180.........190...
 
   342.......350.........360.........370.........380.........390......... 400.........410.........420
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Query Sequence  AHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALAVRQAVKG. KAREMAAAQKVADWQIAAILN
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Template Sequence  R. V. HGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIY
Template Known Secondary structure  G.
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S

S
SS
TGGGGG
SS

STTTTS


SS

T
S
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   194 . ....200.........210.........220.........230.........240.........250.........260.........270.
 
   421........430......... 440.........450.
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Query Sequence  IGQRAKHPLFVTNVDDTRL. . . . . DDIAAWTYRAPV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  APIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQLDENGYAKRDE
Template Known Secondary structure 


TT
TT
S
BSTTBBB
TT

TTTTTTTT

TTSSB
B
TTSSB
B
T
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   273......280.........290.........300.........310.........320.........330.........340.........350..
 
   452.......460.........470.........480.........490.........500 .........510.........520
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Query Sequence  . . . . . . EDQARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIIS. . . . . GTNAGSLEVIQAAANVAKAL
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Template Sequence  TLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLL
Template Known Secondary structure  TS
STTBTT




GGGSTT

SSSTT
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   353......360.........370.........380.........390.........400.........410.........420.........430..
 
   521...... ..530.........540..
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Query Sequence  KGRGADV. GITMIARSVNSMGLG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GNMGMAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSF
Template Known Secondary structure  T
TT
TT
S


BTTTT
STTGGG

BTT

SS


SSSS


GGGG
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   433......440.........450.........460.........470.........480.........490.........500.........510..
 
   543......550.........560........ .570.........580.........590.........600...
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Query Sequence  . . . . . . . . . . . . . . . . . . IMGGGSLEEALTELETGRADAVVVLE. NDLHRHASAIRVNAALAKAPLVMVVDHQRTAIMEN
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Template Sequence  YGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVIDPLVTETSTF
Template Known Secondary structure  GGG

GGGGGGGGGS

BSS


TT


S

SSSTT
SSB

TTTTT
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   513......520.........530.........540.........550.........560.........570.........580.........590..
 
   604 .....610.........620.........630.........640.........650.........660
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Query Sequence  A. . . . . . . . . . . . . . . . . HLVLSAASFAESDGTVINNEGRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLL. . . . . .
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Template Sequence  WQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQ. . . . . DAPGEARNDGEILAGIYHHLRELYQSE
Template Known Secondary structure  TS

GGGG


GGG


B

GGGS

TT



S.....

STT
B
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   593......600.........610.........620.........630.........640 .........650.........660.......
 
   661........670.........680.........690.........700.........710.........720.........730
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Query Sequence  . . . . . . . . . . SREVDWTQLDHVIDAVVAKIPELAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDI
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Template Conservation                              
  
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Template Sequence  GGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGY. . . . . . . . . . . . . . . . . . . ALEDLYDANGVLIAKKGQLLSSFAHLRD
Template Known Secondary structure 

SSS



SSTTS


...................SS

TTS

TT
B
S
GGG

S
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   668.670.........680.........690.........700 .........710.........720........
 
   731........740.........750.........760.........770.........780.........790.........800.........810
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Query Sequence  DTMFTFSMEGNNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTSVPARFQPQDGKW
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Template Sequence  DGTTASSCWIYTGSW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TEQGNQMANRDNSDPSGLGNTLGWA
Template Known Secondary structure  SSS
S
GGGTTS........................................TTGGG
B



TTSSS

TTBS
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   729730.........740... ......750.........760........
 
   811........820.........830.........840.........850.........860.....
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Query Sequence  RIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGTRVSFSYDGN
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Template Conservation     
        
        
       
           
 
          
Template Sequence  WAWPLNRRVLYNRASADINGKPWDPKRMLIQWNGSKWTGNDIPDFGNAAPGTPTG
Template Known Secondary structure  TTTT
SSTTGGGGB
TTS
BSSTTS


SSSSS

SS
S

TTSS

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   769770.........780.........790.........800.........810.........820...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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