 |
Job Description | P33602 | Confidence | 91.53% | Date | Thu Jan 5 11:52:24 GMT 2012 |
Rank | 176 | Aligned Residues | 111 |
% Identity | 9% | Template | c3fxaA_ |
PDB info |
PDB header:sugar binding protein | Chain: A: PDB Molecule:sis domain protein; |
PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution
|
Resolution | 1.60 Å |
|
 |
  |   |
296 | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | |
. | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | Q | A | M | Q | G | A | A | D | I | L | R | Q | S | K | . |
K | V | I | G | I | G | S | P | R | A | S | V | E | S | N | F | A | L | R | E | L | V | G | E | E | N | F | Y | T | G | I | A | H | G | E | Q | E | R | L | Q | L | A | L | K | V | L | R | E | G | G | I | Y | T | P | A | L | R | E | I | E | S | Y | D | A |
Query Conservation |   |
|
|
|
|   |   |
|
|
|
|
|   |   |   |   | . |   |   |   |
|   |   |
|   |   |   |
|   |
|   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |
|   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|
|
Template Sequence |   |
E | E | A | L | V | K | T | V | E | K | I | A | E | C | T | G | K | I | V | V | A | G | C | G | T | S | G | V | A | A | K | K | L | V | H | S | F | N | C | I | E | R | P | A | V | F | L | T | P | S | D | A | V | H | G | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | G | V | L | Q | K | E | D | I |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  |  |
|
| T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |
|
|  |  |  |  | T | T | T | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | G | G |
|
| T | T |
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 90 | . | . | . | . |
  |
  |   |
375 | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | |
. | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | L | V | L | G | E | D | V | T | Q | T | G | A | R | V | A | L | A | V | R | Q | A | V | K | G | K | A | R | E | M | A | A | . |
A | Q | K | V | A | D | W | Q | I | A | A | I | L | N | I | G | Q |
Query Conservation |   |
|
|   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |
|   |
|
|
| . |
|
|
|   |   |   |   |
|   |   |
|
|   |   |
|   |   |
Alig confidence |   |
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
| . | . |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|
|   |
|
|   |   |   |   |
|   |
|   |   |   |
|
|   |   |
|   |   |
Template Sequence |   |
L | I | L | I | . |
. |
S | K | G | G | N | T | G | E | L | L | N | L | I | P | A | C | K | T | K | G | S | T | L | I | G | V | T | E | N | P | D | S | V | I | A | K | E | A | D | I | F | F | P | V |
Template Known Secondary structure |   |
 |  |  |  | . | . |
| S | S | S |
|
|  |  |  |  | T | T |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  | S |
| T | T | S |  |  |  |  |  |
| S |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
95 | . | . | . | |
|
. | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|