Job Description P33602 Confidence 100.00% Date Thu Jan 5 11:52:24 GMT 2012 Rank 6 Aligned Residues 628 % Identity 17% Template c2v45A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand Resolution 2.40 Å

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		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		Q	F	A	P	S	I	C	Q	Q	C	S	I	G	C	N	I	S	P	G	E	R	Y	G	E	L	R	R	I	E	N	R	Y	N	G	T	V	N	H	Y	F	L	C	D	R	G	R	F	G	Y	G	Y	V	N	L	K	D	R	P	R	Q	P	V	Q	R	R	G	.	.	D	D	F	I	T	L	N	A	E	Q	A	M
Query Conservation																																																																				.	.
Alig confidence																																					.																															.	.
Template Conservation																																					.
Template Sequence		K	W	V	K	G	V	C	R	Y	C	G	T	G	C	G	V	L	V	G	V	K	D	G	K	A	V	A	I	Q	G	N	P	N	N	H	.	N	A	G	L	L	C	L	K	G	S	L	L	I	P	V	L	N	S	K	E	R	V	T	Q	P	L	V	R	R	H	K	G	G	K	L	E	P	V	S	W	D	E	A	L
Template Known Secondary structure									S	S		T	T										T	T									T	T	S	T	.	T	T	T								T						T		S		S			S					S	S	T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.							.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.					.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																			.	.	.	.
Query SS confidence																	.	.	.	.	.	.																			.	.	.	.
Query Sequence		Q	G	A	A	D	I	L	R	Q	S	K	K	V	I	G	.	.	.	.	.	.	I	G	S	P	R	A	S	V	E	S	N	F	A	L	R	E	L	V	.	.	.	.	G	E	E	N	F	Y	T	G	I	A	H	G	E	Q	E	R	L	Q	L	A	L	K	V	L	R	E	G	G	I	Y	T	P	A	L	R	E	I
Query Conservation																	.	.	.	.	.	.																			.	.	.	.
Alig confidence																	.	.	.	.	.	.																			.	.	.	.																									.
Template Conservation																																																																					.
Template Sequence		D	L	M	A	S	R	F	R	S	S	I	D	M	Y	G	P	N	S	V	A	W	Y	G	S	G	Q	C	L	T	E	E	S	Y	V	A	N	K	I	F	K	G	G	F	G	T	N	N	V	D	G	N	P	R	L	C	M	A	S	A	V	G	G	Y	V	T	S	F	.	G	K	D	E	P	M	G	T	Y	A	D	I
Template Known Secondary structure																	G	G	G							T	T	S														T	T	T								G	G	G	G	T	T												.	S	S		S		S	S		G	G	G	G
Template Predicted Secondary structure																																																																					.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.			.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.						440	.	.
Predicted Secondary structure																															.	.																																										.	.	.	.	.
Query SS confidence																															.	.																																										.	.	.	.	.
Query Sequence		E	S	Y	D	A	V	L	V	L	G	E	D	V	T	Q	T	G	A	R	V	A	L	A	V	R	Q	A	V	K	.	.	G	K	A	R	E	M	A	A	A	Q	K	V	A	D	W	Q	I	A	A	I	L	N	I	G	Q	R	A	K	H	P	L	F	V	T	N	V	D	D	T	R	L	.	.	.	.	.	D	D	I
Query Conservation																															.	.																																										.	.	.	.	.
Alig confidence																															.	.																																										.	.	.	.	.
Template Conservation
Template Sequence		D	Q	A	T	C	F	F	I	I	G	S	N	T	S	E	A	H	P	V	L	F	R	R	I	A	R	R	K	Q	V	E	P	G	V	K	I	I	V	A	D	P	R	R	T	N	T	S	R	I	A	D	M	H	V	A	F	R	P	G	T	D	L	A	F	M	H	S	M	A	W	V	I	I	N	E	E	L	D	N	P
Template Known Secondary structure		G	T		S						S							S															T	T								S	B			G	G	G	G	G		S							T	T																T	T		S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		443	.	.	.	.	.	.	450								.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.					.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure										.	.	.	.	.	.	.																																																				.	.	.	.
Query SS confidence										.	.	.	.	.	.	.																																																				.	.	.	.
Query Sequence		A	A	W	T	Y	R	A	P	.	.	.	.	.	.	.	V	E	D	Q	A	R	L	G	F	A	I	A	H	A	L	D	N	S	A	P	A	V	D	G	I	E	P	E	L	Q	S	K	I	D	V	I	V	Q	A	L	A	G	A	K	K	P	L	I	I	S	G	.	.	.	.	T	N	A	G	S	L	E	V	I	Q
Query Conservation										.	.	.	.	.	.	.																																																				.	.	.	.
Alig confidence										.	.	.	.	.	.	.																																					.	.	.													.	.	.	.
Template Conservation																																																					.	.	.
Template Sequence		R	F	W	Q	R	Y	V	N	F	M	D	A	E	G	K	P	S	D	F	E	G	Y	K	A	F	L	E	N	Y	R	P	E	K	V	A	E	I	C	R	V	P	V	E	Q	I	Y	G	A	A	R	A	.	.	.	F	A	E	S	A	A	T	M	S	L	W	C	M	G	I	N	Q	R	V	Q	G	V	F	A	N	N
Template Known Secondary structure													T	T	S		B											G	G	G										T	S												.	.	.				S	S	S											S	S	T	T
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.		.	.	530	.	.	.	.	.	.	.	.	.	540																																						.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	A	N	V	A	K	A	L	K	G	R	G	A	D	V	.	G	I	T	M	I	A	R	S	V	N	S	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	I	M	G	G	G	S	L	E	E	A	L
Query Conservation																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	H	N	L	H	L	I	T	G	Q	I	C	R	P	G	A	T	S	F	S	L	T	G	Q	P	N	A	C	G	G	V	R	D	G	G	A	L	S	H	L	L	P	A	G	R	A	I	P	N	A	K	H	R	A	E	M	E	K	L	W	G	L	P	E	G	R	I	A	P	E	P	G	Y	H	T	V	A	L	F
Template Known Secondary structure											T			S	B	T	T	B								S	T	T					T	T	T	T	T		S	T	T			T	T	T			T	T												T	T			T	T		S		S	S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.		.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.		.	590	.	.	.	.	.	.	.		.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Predicted Secondary structure																	.																					.										.
Query SS confidence																	.																					.										.
Query Sequence		T	E	L	E	T	G	R	A	D	A	V	V	V	L	E	.	N	D	L	H	R	H	A	S	A	I	R	V	N	A	A	L	A	K	A	P	.	L	V	M	V	V	D	H	Q	R	.	T	A	I	M	E	N	A	H	L	V	L	S	A	A	S	F	A	E	S	D	G	T	V	I	N	N	E	G	R	A	Q	R	F
Query Conservation																	.																					.										.
Alig confidence																	.																					.										.
Template Conservation
Template Sequence		E	A	L	G	R	G	D	V	K	C	M	I	I	C	E	T	N	P	A	H	T	L	P	N	L	N	K	V	H	K	A	M	S	H	P	E	S	F	I	V	C	I	E	A	F	P	D	A	V	T	L	E	Y	A	D	L	V	L	P	P	A	F	W	C	E	R	D	G	V	Y	G	C	G	E	R	R	Y	S	L	T
Template Known Secondary structure							T	S								S							S	S	S								T	T		T	T								S		T	T		G	G	G	G	S		S					B			G	G	G	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.			.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		F	Q	V	Y	D	P	A	Y	Y	D	S	K	T	V	M	L	E	S	W	R	W	L	H	S	L	H	S	T	L	L	S	R	E	.	.	V	D	W	T	Q	L	D	H	V	I	D	A	V	V	A	K	I	P	E	L	A	G	I	K	D	A	A	P	D	A	T	F	R	I	R	G	Q	K	L	A	R	E	P	H	R
Query Conservation																																			.	.
Alig confidence						.	.	.	.	.																									.	.
Template Conservation						.	.	.	.	.
Template Sequence		E	K	A	V	.	.	.	.	.	D	P	P	G	Q	C	R	P	T	V	N	T	L	V	E	F	A	R	R	A	G	V	D	P	Q	L	V	N	F	R	N	A	E	D	V	W	N	E	W	R	M	V	S	K	G	T	T	Y	D	F	W	G	M	T	R	E	R	L	R	K	E	S	G	L	I	W	P	C	P	S	E
Template Known Secondary structure					S	.	.	.	.	.			S	T	T		B													T	T			T	T	T	T			S	S													T	T	S	T	T			T	T									S	S				S				S	T
Template Predicted Secondary structure						.	.	.	.	.
Template SS confidence
		482	.	.	.						.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
		709	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	G	R	T	A	M	R	A	N	I	S	V	H	E	P	R	Q	P	Q	D	I	D	T	M	F	T	F	S	M	E	G	N	N	Q	P	T	A	H	R	S	Q	V	P	F	A	W	A	P	G	W	N	S	P	Q	A	W	N	K	F	Q	D	E	V	G	G	K	L	R	F	G	D	P	G	V	R	L	F	E	T
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	H	P	G	T	S	L	R	Y	V	R	G	Q	D	P	C	V	P	A	D	H	P	D	R	F	F	F	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	D	G	R	A	V	I	W
Template Known Secondary structure		T					S	S	T	T	B	T	T	T	S	T	T	S		T	T		S	S	S	B			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.																																											.	.	.	.	590	.	.	.	.
		789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	N	G	L	D	Y	F	T	S	V	P	A	R	F	Q	P	Q	D	G	K	W	R	I	A	P	Y	Y	H	L	F	G	S	D	E	L	S	Q	R	A	P	V	F	Q	S	R	M	P	Q	P	Y	I	K	L	N	P	A	D	A	A	K	L	G	V	N	A	G	T	R	V	S	F	S	Y	D	G	N	T	V	T
Query Conservation
Alig confidence																															.	.	.
Template Conservation																															.	.	.
Template Sequence		M	R	P	A	K	G	A	A	E	E	P	D	A	E	Y	P	L	Y	L	T	S	M	R	V	I	D	H	W	H	.	.	.	T	A	T	M	T	G	K	V	P	E	L	Q	K	A	N	P	I	A	F	V	E	I	N	E	E	D	A	A	R	T	G	I	K	H	G	D	S	V	I	V	E	T	R	R	D	A	M	E
Template Known Secondary structure									S	S				S	S	S										S	S			T	.	.	.	T		T	T	G	G	G		G	G	G	G	S	S		S	S														T			T	T								S	S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.				.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.
		869	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.		.	.	.	.	.	.	900	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		L	P	V	E	I	A	E	G	L	T	A	G	Q	V	G	L	P	M	G	M	S	G	I	A	P	.	V	L	A	G	A	H	L	E	D	L	K
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		L	P	A	R	V	S	D	V	C	R	P	G	L	I	A	V	P	F	F	D	P	K	K	L	V	N	K	L	F	L	D	A	T	D	P	V	S
Template Known Secondary structure								S	S	B		T	T									T	T	S		G	G	G	T	S				B		T	T	T
Template Predicted Secondary structure
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.