Job Description P33602 Confidence 99.70% Date Thu Jan 5 11:52:24 GMT 2012 Rank 38 Aligned Residues 179 % Identity 12% Template c2h89B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound Resolution 2.40 Å

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		5	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure													.																.
Query SS confidence													.																.
Query Sequence		H	V	D	G	K	E	Y	E	V	N	G	.	A	D	N	L	L	E	A	C	L	S	L	G	L	D	I	.	P	Y	F	C	W	H	P	A	L	G	S	V	G	A	C	R	Q	C	A	V	K	Q	Y	Q	N	A	E	D	T	R	G	R	L	V	M	S	C	M	T	P	A	S	D	G	T	F	I	S	I	D	D	E
Query Conservation													.																.
Alig confidence													.																.												.											.	.	.	.	.	.	.
Template Conservation																																									.											.	.	.	.	.	.	.
Template Sequence		R	M	Q	T	Y	E	V	D	L	N	K	C	G	P	M	V	L	D	A	L	I	K	I	K	N	E	L	D	S	T	L	T	F	R	R	S	C	R	E	.	G	I	C	G	S	C	A	M	N	I	.	.	.	.	.	.	.	A	G	G	N	T	L	A	C	T	K	K	I	D	P	D	L	S	K	T	T	K	I	Y
Template Known Secondary structure										G	G	G	S		S	B												T		T	T								S	S	.	S	S	S		T	T					.	.	.	.	.	.	.	T	T					T	T	T	S	B					T	T	S
Template Predicted Secondary structure																																									.											.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.								.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		E	A	K	Q	F	R	E	S	V	V	E	W	L	M	T	N	H	P	H	.	.	D	C	P	V	C	E	E	G	G	N	C	H	L	Q	D	M	T	V	M	T	G	H	S	F	R	R	Y	R	F	T	K	R	T	H	R	N	Q	D	L	G	P	F	I	S	H	E	M	N	R	C	I	A	C	Y	R	C	V	R	Y
Query Conservation																					.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.							.	.																																												.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Template Sequence		P	.	.	.	.	.	.	.	.	.	.	.	.	L	P	H	M	Y	V	V	K	D	L	V	P	D	L	S	N	F	Y	A	Q	Y	K	S	I	E	P	Y	L	K	K	K	D	E	S	K	Q	G	K	E	Q	Y	L	Q	S	I	E	D	R	Q	K	L	.	D	G	L	Y	E	C	I	L	C	A	C	C	S	T	S
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	S	S	S						T	T													T	T			S				S			T	T	T	T	S	S											T	T	.	T	T	T	T	T						T	T	G	G	G
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Template SS confidence
		101													.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		161								.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.											180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	.	.	.	.	.	.	.	K	D	Y	A	D	G	T	D	L	G	V	Y	G	A	H	D	N	V	.	.	.	.	.	.	.	.	.	.	Y	F	G	R	P	E	D	G	T	L	E	S	E	F	S	G	N	L	V	E	I	C	P	T	G
Query Conservation			.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	P	S	Y	W	W	N	G	D	K	Y	L	G	P	A	V	L	M	Q	A	Y	R	W	M	I	D	S	R	D	D	Y	T	E	E	R	L	A	Q	L	Q	D	P	F	S	L	Y	R	C	H	T	I	M	N	C	T	R	T	C	P	K	G
Template Known Secondary structure									T	T	T															S		T	T		S								T	T		S	T	T	T	T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions