Job Description P33602 Confidence 99.79% Date Thu Jan 5 11:52:24 GMT 2012 Rank 35 Aligned Residues 175 % Identity 15% Template c1nekB_ PDB info PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound Resolution 2.60 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	E	V	N	G	A	D	N	L	L	E	A	C	L	S	L	G	L	D	I	P	Y	F	C	W	H	P	A	L	G	S	V	G	A	C	R	Q	C	A	V	K	Q	Y	Q	N	A	E	D	T	R	G	R	L	V	M	S	C	M	T	P	A	S	D	G	T	F	I	S	I	D	D	E	E	A	K	Q	F	R	E
Query Conservation
Alig confidence																																	.												.	.	.	.	.	.	.																			.									.	.	.
Template Conservation																																	.												.	.	.	.	.	.	.																			.									.	.	.
Template Sequence		E	A	D	E	G	R	D	M	M	L	L	D	A	L	I	Q	L	K	E	K	D	P	S	L	S	F	R	R	S	C	R	.	E	G	V	C	G	S	D	G	L	N	M	.	.	.	.	.	.	.	N	G	K	N	G	L	A	C	I	T	P	I	S	A	L	N	Q	P	.	G	K	K	I	V	I	R	P	.	.	.
Template Known Secondary structure					S	S	S			B													T	T							S	S	.	S	S		S		T	T					.	.	.	.	.	.	.	T	T					T	T	S		B	T	T	T	T			T	.	T	S							.	.	.
Template Predicted Secondary structure																																	.												.	.	.	.	.	.	.																			.									.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.								.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		S	V	V	E	W	L	M	T	N	H	P	H	.	.	D	C	P	V	C	E	E	G	G	N	C	H	L	Q	D	M	T	V	M	T	G	H	S	F	R	R	Y	R	F	T	K	R	T	H	R	N	Q	D	L	G	P	F	I	S	H	E	M	N	R	C	I	A	C	Y	R	C	V	R	Y	Y	K	D	Y	A	D	G
Query Conservation														.	.
Alig confidence		.	.	.	.	.	.							.	.																																											.	.
Template Conservation		.	.	.	.	.	.																																																			.	.
Template Sequence		.	.	.	.	.	.	L	P	G	L	P	V	I	R	D	L	V	V	D	M	G	Q	F	Y	A	Q	Y	E	K	I	K	P	Y	L	L	N	N	G	Q	N	P	P	A	R	E	H	L	Q	M	P	E	Q	R	E	K	L	.	.	D	G	L	Y	E	C	I	L	C	A	C	C	S	T	S	C	P	S	F	W	W	N
Template Known Secondary structure		.	.	.	.	.	.		S	S	S					T	T														T			S							S			S	S	S										T	T	.	.	T	T	T	S											T
Template Predicted Secondary structure		.	.	.	.	.	.																																																			.	.
Template SS confidence
								94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		168	.	170	.	.	.																		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	L	G	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	H	D	N	V	Y	F	G	R	P	E	D	G	T	L	E	S	E	F	S	G	N	L	V	E	I	C	P	T	G
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	D	K	F	I	G	P	A	G	L	L	A	A	Y	R	F	L	I	D	S	R	D	T	E	T	D	S	R	L	D	G	L	S	D	A	F	S	V	F	R	C	H	S	I	M	N	C	V	S	V	C	P	K	G
Template Known Secondary structure		T	T	T	S														T		T	T										T	T		S	S	S	T	T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions