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Job DescriptionP33602
Confidence100.00%DateThu Jan 5 11:52:24 GMT 2012
Rank3Aligned Residues681
% Identity16%Templatec1kqgA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit; PDBTitle: formate dehydrogenase n from e. coli
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   215....220.... .....230.........240... ......250.........260.........270.........280....
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Query Sequence  YNRKWDMQFA. . . PSICQQCSIGCNISPGERY. . . . . . . GELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQ
Query Conservation    
 
 
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Template Conservation            
 
 
 
  
   

  
 
   
     
 

 
 


  
 
 
  
 

 
     
 
 

  


Template Sequence  QARNYKLLRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEY
Template Known Secondary structure 




TTTTS
SSBTT

S
S
TTS


TT
TTTTT


TTT
TTB

S
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   34.....40.........50.........60.........70.........80.........90.........100.........110...
 
   285... .290.........300.........310..... ....320.........330.........340....
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Query Sequence  RRGD. . DFITLNAEQAMQGAADILRQSKKVIGI. . . . . . . . . . . . . . . . . . GSPRASVESNFALRELVGEENFYTGIAHG
Query Conservation 
  
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Template Conservation 
  
 
 
  





 
 

  
  
    
                                       

 
     
Template Sequence  RAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQA
Template Known Secondary structure 
TT
SS




TTS
B
S
TTS
TTB

GG
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   114.....120.........130.........140.........150.........160.........170.........180.........190...
 
   345. ...350.........360.........370.........380.........390.........400 .........410.........420..
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Query Sequence  EQ. ERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALAVRQAVKGK. AREMAAAQKVADWQIAAILNIG
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Template Conservation                
         
   
  

  
 

             
    
 
 





 
 

  

 


Template Sequence  RVHGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAP
Template Known Secondary structure  G

S

S
SS
TGGGGG
SS

SS


SS

T
S
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   194.....200.........210.........220.........230.........240.........250.........260.........270...
 
   423......430......... 440.........450...
Predicted Secondary structure 




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Query Sequence  QRAKHPLFVTNVDDTRL. . . . . DDIAAWTYRAPVED. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation    

 

 
       
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Template Sequence  IRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQLDENGYAKRDETL
Template Known Secondary structure 

TT
TT
S
BSTTBBB
TT

TTTTTTTT

TTSSB
B
TTSSB
B
TTS
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   275....280.........290.........300.........310.........320.........330.........340.........350....
 
   454.....460.........470.........480.........490.........500 .........510.........520..
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Query Sequence  . . . . . . QARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIIS. . . . . GTNAGSLEVIQAAANVAKALKG
Query Conservation  ......             
 
  
 

    
   
              
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Template Conservation      
 
  
      



 

 






 
  

   
          
    
     

     
   
 

 

Template Sequence  THPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGN
Template Known Secondary structure 
STTBTT




GGGSTT

SSSTTTT
Template Predicted Secondary structure 


























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   355....360.........370.........380.........390.........400.........410.........420.........430....
 
   523... ...530.........540....
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Query Sequence  RGAD. VGITMIARSVNSMGLGIM. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation      . 
        
  
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Template Conservation 
  



     
  
  
    
      
                                                 
Template Sequence  MGMAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFYG
Template Known Secondary structure  TTSTT
S


BTTTT
STTGGG

BTT

SS


SSSS


GGGGG
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   435....440.........450.........460.........470.........480.........490.........500.........510....
 
   545....550.........560........ .570.........580.........590.........600.....
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Query Sequence  . . . . . . . . . . . . . . . . . . GGGSLEEALTELETGRADAVVVLE. NDLHRHASAIRVNAALAKAPLVMVVDHQRTAIMENAH
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Template Conservation                                    

       

  
        


 


 

  
   



  

Template Sequence  DAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVIDPLVTETSTFWQ
Template Known Secondary structure  GG

GGGGGGGGGS

BSS


TT


S

SS
TT
SSB

TGGGTTS
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   515....520.........530.........540.........550.........560.........570.........580.........590....
 
   606...610.........620.........630.........640.........650.........660
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Query Sequence  . . . . . . . . . . . . . . . . . LVLSAASFAESDGTVINNEGRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLL. . . . . . . .
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Template Sequence  NHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQ. . . . . DAPGEARNDGEILAGIYHHLRELYQSEGG
Template Known Secondary structure 

GGGG


GGG


B

GGGS

TTS


S.....

STT
B


Template Predicted Secondary structure 
































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   595....600.........610.........620.........630.........640 .........650.........660.........
 
   661........670.........680.........690.........700.....
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Query Sequence  . . . . . . . . . . . . SREVDWTQLDHVIDAVVAKIPELAGIKDAAPDATFRIRGQKLARE. . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
                   
Template Sequence  KGVEPLMKMSWNYKQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYTGSWTEQGNQ
Template Known Secondary structure  SSS



SSTTS


SS

TTS

TT
B
S
GGG

SSSS
S
GGGTTSTTG
Template Predicted Secondary structure 
















































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   670.........680.........690.........700.........710.........720.........730.........740.........
 
   706...710.........720.........730.........740....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PHRYSGRTAMRANISVHEPRQPQDIDTMFTFSMEGNNQP
Query Conservation  .........................................                                       
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Template Conservation                                                                        

 

     
Template Sequence  MANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLIQWNGSKWTGNDIPDFGNAAPGTPTGPFIMQP
Template Known Secondary structure  GG
B



TTSSS

TTBSTTTT
SSTTGGGGB
TTS
BSSGGG


SSSSS

SS
S

TTSS

S
TTST
Template Predicted Secondary structure 












































































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   750.........760.........770.........780.........790.........800.........810.........820.........
 
   745....750.........760.........770.........780.........790.........800.........810.........820....
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Query Sequence  TAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTSVPARFQPQDGKWRIAPYYHLFGSDEL
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Template Conservation                   
   

   
                               

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Template Sequence  EGMGRLFAINKMAEGPFPEHYEPIETPLGTNPLHPNVVSNPVVRLYEQDALRMGKKEQFP. . . . . YVGTTYRLTEHFHTW
Template Known Secondary structure  TSSB
SS
TT
STT
SS





SS
TTSS
TT
TT

S
TT



TT


TTT

.....

TT

TTT
Template Predicted Secondary structure 
























































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   830.........840.........850.........860.........870.........880......... 890.........900....
 
   825....830.........840.........850.........860.........870......... 880.........890......
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Query Sequence  SQRAPVFQSRMPQPYIKLNPADAAKLGVNAGTRVSFSYDGNTVTLPVEIAEGLTA. . . . . . . . GQVGLPMGMSGIAPVLA
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Template Conservation        
    
   
 


 

  



 

 
 
 
  
 
   
 

  
 
  
       
  
   
       
Template Sequence  TKHALLNAIAQPEQFVEISETLAAAKGINNGDRVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGIPIHWGFEGVARK
Template Known Secondary structure  GGGSS
S

T

TT
TT
TTS

TT




SSSSS

Template Predicted Secondary structure 









































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   905....910.........920.........930.........940.........950.........960.........970.........980....
 
   897..900.....
Predicted Secondary structure 







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Query Sequence  GAHLEDLKE
Query Conservation 
        
Alig confidence 








Template Conservation 
   
 

 
Template Sequence  GYIANTLTP
Template Known Secondary structure 


GGGS

Template Predicted Secondary structure 





Template SS confidence 








   985....990...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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