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Job DescriptionP33602
Confidence100.00%DateThu Jan 5 11:52:24 GMT 2012
Rank16Aligned Residues626
% Identity16%Templatec1eu1A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:dimethyl sulfoxide reductase; PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments.
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   226...230.........240.........250.........260.........270.........280...... ...290
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Query Sequence  SICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQRR. . . . . . . . . . . . . . . GDDF
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Template Sequence  EVMSGCHWGV. FKARVENGRAVAFEPWDKDPAPSHQLPGVL. . . . DSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDF
Template Known Secondary structure  TT.TT
TT
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TT....TTTSTTB

S
GGGS
GGGTTSS
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   7..10...... ...20.........30.........40...... ...50.........60.........70.........80.
 
   291........300.........310.... .....320.........330...... ...340.........350.......
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Query Sequence  ITLNAEQAMQGAADILRQSKKVIG. . . . . . . . . . IGSPRASVESNFALRELVGEEN. . FYTGIAHGEQERLQLALKVLR.
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Template Sequence  VRVTWDEALDLVARELKRVQESYGPTGTFGGSYGWKSPGRLHNCQVLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGT
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GGG









SS

T

BS
SSSTTTSS
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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   358.360.........370.........380........ .390.........400.........410...... ...420.......
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Query Sequence  . . EGGIYTPALREIESYDAVLVLGEDVTQTGAR. . . . . . . VALAVRQAVKGKAREMAAAQKVADWQIA. AILNIGQRAKH
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Template Sequence  LEVYEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIINPVRTETADYFGADVVSPRPQT
Template Known Secondary structure 

TTS

S

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TT

SSB


T



SB

T






TT
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   162.......170.........180.........190.........200.........210.........220.........230.........240.
 
   428.430......... 440.........450.........460... ......470.........480.........490......
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Query Sequence  PLFVTNVDDTRL. . . . . DDIAAWTYRAPVEDQARLGFAIAH. . . . . . ALDNSAPAVDGIEPELQSKIDVIVQALAGAKKP
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Template Sequence  DVALMLGMAHTLYSEDLHDKDFLENCT. . TGFDLFAAYLTGESDGTPKTAEWAAEICGLPAEQIRELARSFVAGRTMLAA
Template Known Secondary structure  TT
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TTTTTS




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   243......250.........260......... 270.........280.........290.........300.........310.........320
 
   497..500.........510.........520...... ...530.........540..... .
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Query Sequence  LIISGTNAGSLEVIQAAANVAKALKGRGAD. VGITMIARSVNSMGLGIMG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . G
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Template Sequence  GWSIQRMHHGEQAHWMLVTLASMIGQIGLPGGGFGLSYHYSNGGSPTSDGPALGGISDGGEGGATSIPCARVVDMLLNPG
Template Known Secondary structure 
SGGGSSTTTT
TTSTT
S
TTSTTTTS


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SGGG
TT
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   321........330.........340.........350.........360.........370.........380.........390.........400
 
   547..550.........560........ .570.........580.........590.........600.........610.........620.....
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Query Sequence  GSLEEALTELETGRADAVVVLE. NDLHRHASAIRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNEG
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Template Sequence  GEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARHADIVLPATTSYERNDIESVGDY
Template Known Secondary structure 
TT




S

SS
GGG
SSB

T
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TT
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   411........420.........430.........440.........450.........460.........470.........480.........490
 
   626...630.........640.........650.........660.... .....670.........680 .........690.......
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Query Sequence  RAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREV. . DWTQLDHVIDAVVAKI. . . . . . PELAGIKDAAPDATFRI
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Template Sequence  SNRAIL. . AMKKVVDPLYEARSDYDIFAALAERLGKGAEFTEGRDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWS. . . .
Template Known Secondary structure  T

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TT
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   491..... ...500.........510.........520.........530.........540.........550.........560....
 
   698.700.........710.........720.........730.........740.........750.........760.........770.......
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Query Sequence  RGQKLAREPHRYSGRTAMRANISVHEPRQPQDIDTMFTFSMEGNNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EGIVEFPITEGANFVRYADFREDPLFNPLGTPSGLIEIYSKN. . IEK
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SGGGG

TT
TTTS

SSTTSSSS
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   565....570.........580.........590.........600...... ...
 
   778.780.........790.........800.........810.........820.........830.........840.........850.......
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Query Sequence  FGDPGVRLFETSENGLDYFTSVPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGTR
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Template Sequence  MGYDDCPAHPTWMEPAERLGGAGAKYPLHVVASHPKSRLH. . . SQLNGTSLRDLYAVAGHEPCLINPADAAARGIADGDV
Template Known Secondary structure 

TTS
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SS
TT
TT

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SSSBT...TBTTTSGGGGGT
BTTB

TTT

TT
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   610.........620.........630.........640......... 650.........660.........670.........680......
 
   858.860.........870.........880......... 890.........900..
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Query Sequence  VSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMS. . . . . . . . . . . . . . . GIAPVLAGAHLED
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Template Sequence  LRVFNDRGQILVGAKVSDAVMPGAIQIYEGGWYDPLDPSEEGTLDKYGDVNVLSLDVGTS
Template Known Secondary structure 
SS

TTB
TT

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BS
TTSTT

BSS

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   687..690.........700.........710.........720.........730.........740......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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