Return to main results Retrieve Phyre Job Id

Job DescriptionP39361
Confidence95.03%DateThu Jan 5 11:59:52 GMT 2012
Rank176Aligned Residues67
% Identity12%Templated1aoya_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Arginine repressor (ArgR), N-terminal DNA-binding domain
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30. . .......40.........50.........60.........70.
Predicted Secondary structure 




.....
.















Query SS confidence 





























. . . . .
.






































Query Sequence  SQQRPDRIKQMLHYLWQHRHLSTQQAMELF. . . . . G. YAEATVRRDFQYIVNQYPGMIRGHGCLDFDDSTDDKEYV
Query Conservation 
 




   

  
     
 
 


   ..... .

  





  

      
   

             
Alig confidence 





























.....
.












...






















Template Conservation 
 

   
  

 

    
 

 

   
   
   









 

...  


    
   
 

 
   
Template Sequence  SAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKF. . . GAVRTRNAKMEMVYCLPAELGVP
Template Known Secondary structure 


STTT



ST
SS

...T

TTS


SS


S
Template Predicted Secondary structure 













...













Template SS confidence 











































































   4.....10.........20.........30.........40.........50... ......60.........70......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions