Job Description P39361 Confidence 96.60% Date Thu Jan 5 11:59:52 GMT 2012 Rank 99 Aligned Residues 141 % Identity 9% Template c3kv1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri Resolution 1.70 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		Q	S	V	A	K	R	E	I	A	A	L	A	R	T	M	.	.	.	.	I	K	D	G	D	C	F	F	L	D	S	G	S	T	C	L	E	L	A	K	C	L	A	D	A	R	V	K	V	I	C	N	D	I	K	I	A	N	E	L	G	C	F	P	H	V	E	S	Y	I	I	G	G	L	I	R	P	G	Y	F	S
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		T	N	E	Q	R	K	Q	V	A	A	L	V	S	S	Y	L	N	N	N	L	Q	E	G	X	A	V	A	V	G	Q	G	Q	N	V	A	A	V	A	D	H	A	G	I	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	N	A	R	F	V	S	A	I	G	G	T	H	I	I	N	.	.
Template Known Secondary structure																							T	T								S															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	B		B						.	.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		V	G	E	S	L	A	L	E	M	I	N	A	F	S	V	E	R	A	F	I	S	C	D	A	L	S	L	E	T	G	I	T	N	A	T	M	F	E	V	G	V	K	T	.	.	R	I	I	Q	R	S	R	E	V	I	L	M	A	D	H	S	K	F	D	A	V	E	P	H	A	V	A	T	L	S	C	I	K	T	I
Query Conservation																																													.	.
Alig confidence		.																																											.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	A	D	H	I	C	R	R	L	A	K	K	Y	G	G	S	S	E	T	L	Y	A	P	A	Y	V	N	D	P	S	L	R	S	A	F	X	E	H	A	T	I	K	E	T	L	S	Q	A	R	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	A	L	V	G	I	G	D	X	D	E	N	S	H	X
Template Known Secondary structure		.													T								S	B	S	B		S	S									T	S												T		.	.	.	.	.	.	.	.	.	.	.	.	.	S													T
Template Predicted Secondary structure		.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.														.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		233	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		I	S	D	S	G	L	P	E	T	I	A	.	Q	R	Y	Q	R	A	G	C
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		V	K	L	G	F	F	T	P	K	E	F	V	E	A	R	L	N	D	G	I
Template Known Secondary structure				T	T	S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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