Job Description Q46809 Confidence 98.74% Date Thu Jan 5 12:34:36 GMT 2012 Rank 2 Aligned Residues 113 % Identity 17% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		K	S	I	V	D	P	S	A	L	V	I	D	L	G	A	Q	K	R	P	T	V	I	S	V	V	G	.	.	A	G	G	K	T	S	L	L	F	W	L	A	E	L	L	Q	A	S	G	R	R	V	L	I	T	T	T	T	H	M	F	M	P	T	S	H	W	P	V	V	F	C	R	D	P	A	M	L	P	H	A	S
Query Conservation																												.	.
Alig confidence																												.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	L	V	K	L	V	D	P	G	V	K	A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	.	.	.	.	.	.	.	.	.	.	.	.	D	T	F	R	A	G	A	F	D	Q	L	K	Q
Template Known Secondary structure																			S	S								S	T	T	S	S															T	T									.	.	.	.	.	.	.	.	.	.	.	.			S	S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.													.	.	.	.	140	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	S	P	I	S	F	C	F	H	S	W	K	A	N	Q	G	K	V	Q	G	F	T	P	E	A	I	D	A	L	V	Q	R	P	E	C	D	V	I	L	I	E	A	D	G	S	R	G	M
Query Conservation
Alig confidence													.																						.
Template Conservation													.																						.
Template Sequence		N	A	T	K	A	R	I	P	F	Y	G	.	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	.	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q
Template Known Secondary structure							T						.					S																T	.	T													T	T
Template Predicted Secondary structure													.																						.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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