Job Description P0AGI4 Confidence 95.79% Date Thu Jan 5 11:29:15 GMT 2012 Rank 2 Aligned Residues 218 % Identity 15% Template d1l7va_ SCOP info ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC Resolution 3.20

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.																.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		S	G	L	K	S	L	N	L	Q	V	F	V	M	I	A	A	I	I	A	I	M	L	F	F	T	W	T	T	D	G	A	Y	L	S	A	R	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	L	L	R	Q	T	A	I	T	G	I	L	A	V	G	M	V	F	V	I	I	S	A	E	I	.
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		R	Q	Q	Q	R	Q	N	I	R	W	L	L	C	L	S	V	L	X	L	L	A	L	L	L	S	L	C	A	G	E	Q	W	I	S	P	G	D	W	F	T	P	R	G	E	L	F	V	W	Q	I	R	L	P	R	T	L	A	V	L	L	V	G	A	A	L	A	I	S	G	A	V	X	Q	A	L	F	E	N	P	L
Template Known Secondary structure																													B	S	S	S	B			S	G	G	G	S	S	T	T	T	T	T					T																											T		T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
						84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																									.	.	.
Query SS confidence		.	.	.	.																																																									.	.	.
Query Sequence		.	.	.	.	D	L	S	V	G	S	M	M	G	L	L	G	G	V	A	A	I	C	D	V	W	L	G	W	P	L	P	L	T	I	I	V	T	L	V	L	G	L	L	L	G	A	W	N	G	W	W	V	A	Y	R	K	V	P	S	F	.	.	.	I	V	T	L	A	G	M	L	A	F	R	G	I	L	I	G	I
Query Conservation		.	.	.	.																																																									.	.	.
Alig confidence		.	.	.	.																			.	.																																					.	.	.
Template Conservation																								.	.
Template Sequence		A	E	P	G	L	L	G	V	S	N	G	A	G	V	G	L	I	A	A	V	L	L	.	.	G	Q	G	Q	L	P	N	W	A	L	G	L	C	A	I	A	G	A	L	I	I	T	L	I	L	L	R	F	A	R	R	H	L	S	T	S	R	L	L	L	A	G	V	A	L	G	I	I	C	S	A	L	X	T	W	A
Template Known Secondary structure				T	T	T	T	T															T	.	.	S		T	T																												T
Template Predicted Secondary structure																								.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	G	T	T	V	S	P	T	S	A	A	M	S	Q	I	G	Q	S	Y	L	P	A	S	T	G	F	I	I	G	A	L	G	L	M	A	F	V	G	W	Q	W	R	G	R	M	R	R	Q	A	L	G	L	Q	S	P	A	S	T	A	V	V	G	R	Q	A	L	T	A	I	I	V	L	G	A	I	W	L	L	N
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	S	T	S	V	D	L	R	Q	L	X	Y	W	X	X	G
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164																																																															.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	R	G	V	P	T	P	V	L	L	L	T	L	L	L	L	G	G	M	F	M	A	T	R	T	A	F	G	R	R	I	Y	A	I	G	G	N	L	E	A	A	R	L	S	G	I	N	V	E	R	T	K	L	A	V	F	A	I	N	G	L	M	V	A	I	A
Query Conservation
Alig confidence																										.	.
Template Conservation																										.	.
Template Sequence		G	F	G	G	V	D	W	R	Q	S	W	L	X	L	A	L	I	P	V	L	L	W	I	C	.	.	C	Q	S	R	P	X	N	X	L	A	L	G	E	I	S	A	R	Q	L	G	L	P	L	W	F	W	R	N	V	L	V	A	A	T	G	W	X	V	G	V	S
Template Known Secondary structure				T	T			G	G	G																.	.																			T	T
Template Predicted Secondary structure																										.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions