Job Description P50457 Confidence 100.00% Date Thu Jan 5 12:04:45 GMT 2012 Rank 36 Aligned Residues 375 % Identity 17% Template c2w8wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser Resolution 2.14 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.																								.	.	.
Query SS confidence																																																							.																								.	.	.
Query Sequence		N	N	E	F	H	Q	R	R	L	S	A	T	P	R	G	V	G	V	M	C	N	F	F	A	Q	S	A	E	N	A	T	L	K	D	V	E	G	N	E	Y	I	D	F	A	A	G	I	A	V	L	N	T	G	.	H	R	H	P	D	L	V	A	A	V	E	Q	Q	L	Q	Q	F	T	H	T	A	Y	Q	.	.	.
Query Conservation																																																							.																								.	.	.
Alig confidence																																															.	.	.						.																								.	.	.
Template Conservation																																															.	.	.
Template Sequence		F	D	G	L	I	A	E	R	Q	K	L	L	D	S	G	V	T	D	P	F	A	I	V	M	E	Q	V	K	S	P	T	E	A	V	I	R	G	K	D	T	I	L	L	G	T	.	.	.	Y	N	Y	M	G	M	T	F	D	P	D	V	I	A	A	G	K	E	A	L	E	K	F	G	S	G	T	Y	G	S	R	M
Template Known Secondary structure		G													T	T				G	G	G				S				S	S	S					T	T							S		.	.	.			T	T		G	G	G																	S				S	B	T	T
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
			79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	I	V	P	Y	E	S	Y	V	T	L	A	E	K	I	N	A	L	A	P	V	S	G	Q	A	K	T	A	F	F	T	T	G	A	E	A	V	E	N	A	V	K	I	A	R	A	H	T	G	R	P	G	V	I	A	F	S	G	G	F	H	G	R	T	Y	M	T	M	A	L	T	G	K	V	A	P	Y	K	I	G
Query Conservation		.
Alig confidence		.																			.	.	.																								.	.	.																														.	.	.
Template Conservation																					.	.	.																								.	.	.																														.	.	.
Template Sequence		L	N	G	T	F	H	D	H	M	E	V	E	Q	A	L	R	D	F	Y	.	.	.	G	T	T	G	A	I	V	F	S	T	G	Y	M	A	N	L	G	I	I	S	T	L	A	.	.	.	G	K	G	E	Y	V	I	L	D	A	D	S	H	A	S	I	Y	D	G	C	Q	Q	G	N	A	E	I	V	R	.	.	.
Template Known Secondary structure		T	T	T																	.	.	.	T		S						S														S	.	.	.		T	T							T	T												S		S					.	.	.
Template Predicted Secondary structure																					.	.	.																								.	.	.																														.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	P	F	P	G	S	V	Y	H	V	P	Y	P	S	D	L	H	G	I	S	T	Q	D	S	L	D	A	I	E	R	L	F	K	S	D	I	E	A	K	Q	V	A	A	I	I	F	E	P	V	Q	G	E	G	G	F	N	V	A	P	K	E	L	V	A	A	I	R	R	L	C	D	E	H	G	I	V	M	I	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																						.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																						.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	H	N	S	V	E	D	L	D	K	R	L	G	R	L	P	.	K	E	P	A	K	L	V	V	L	E	G	V	Y	S	M	L	G	D	I	A	P	.	.	.	.	L	K	E	M	V	A	V	A	K	K	H	G	A	M	V	L	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T												S		.	S	S	S								S			T	T	T	T					.	.	.	.											T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																						.	.	.	.
Template SS confidence
																						176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		238	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure							.																	.	.
Query SS confidence							.																	.	.
Query Sequence		D	E	V	Q	S	.	G	F	A	R	T	G	K	L	F	A	M	D	H	Y	A	D	.	.	K	P	D	L	M	T	M	A	K	S	L	A	G	G	M	P	L	S	G	V	V	G	N	A	N	I	M	D	A	P	A	P	G	G	L	G	G	T	Y	A	G	N	P	L	A	V	A	A	A	H	A	V	L	N	I	I
Query Conservation							.																	.	.
Alig confidence							.																	.	.
Template Conservation
Template Sequence		D	E	A	H	S	M	G	F	F	G	P	N	G	R	G	V	Y	E	A	Q	G	L	E	G	Q	I	D	F	V	V	G	T	F	S	K	S	V	G	T	V	G	G	F	V	V	S	N	H	P	K	F	E	A	V	R	L	A	C	R	P	Y	I	F	T	A	S	L	P	P	S	V	V	A	T	A	T	T	S	I	R
Template Known Secondary structure				T	T	T	T	T	T	S	S	T	T	S							T	T		T	T	T		S						S	T	T	T	T		S	S									T	T	G	G	G										T	S	B
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		D	K	E	S	L	C	E	R	A	N	Q	L	G	Q	R	L	K	N	T	L	I	D	A	K	E	S	V	P	A	I	A	A	V	R	G	L	G	S	M	I	A	V	E	F	N	D	P	Q	T	G	E	P	S	A	A	I	A	Q	K	I	Q	Q	R	A	L	A	Q	G	L	L	L	L	T	C	G	A	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.																										.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.
Template Sequence		K	L	M	T	A	H	E	K	R	E	R	L	W	S	N	A	R	A	L	H	G	G	L	K	A	M	G	F	R	L	G	T	E	T	C	D	S	A	I	V	A	V	M	L	.	.	.	.	.	.	.	E	D	Q	E	Q	A	A	M	M	W	Q	A	L	L	D	G	G	L	Y	V	N	M	A	R	P	P	A	T	P
Template Known Secondary structure				T	T																						T	T				S		S	S			S	S							.	.	.	.	.	.	.	S	S														T	T								T	T	T	S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.								.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
			391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Y	G	N	V	I	R	F	L	Y	P	L	T	I	P	D	A	Q	F	D	A	A	M	K	I	L	Q	D	A	L	S	D
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		A	G	T	F	L	L	R	C	S	I	C	A	E	H	T	P	A	Q	I	Q	T	V	L	G	M	F	Q	A	A	G	R	A
Template Known Secondary structure		T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low