Job Description P76628 Confidence 1.52% Date Thu Jan 5 12:25:05 GMT 2012 Rank 74 Aligned Residues 196 % Identity 16% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	N	H	E	L	S	P	A	L	I	V	L	M	S	I	A	T	G	L	A	V	A	S	N	Y	Y	A	Q	P	L	L	D	T	I	A	R	N	F	S	L	S	A	S	S	A	G	F	I	V	T	A	A	Q	L	G	Y	A	A	G	L	L	F	L	V	P	L	G	D	M	F	E	R	R	R	L	I	V	S	M
Query Conservation
Alig confidence																															.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.
Template Sequence		F	E	E	Y	S	I	E	P	H	S	I	P	L	T	L	I	G	A	A	L	L	W	F	G	W	F	G	F	N	.	.	.	.	.	.	G	G	S	A	L	A	A	N	D	V	A	I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	G	K	P	G	S	L	G	I	V
Template Known Secondary structure		T	T	T	S					S																					.	.	.	.	.	.		G	G	G	S	S	S	S																													S
Template Predicted Secondary structure																															.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.							.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		T	L	L	A	A	G	G	M	L	I	T	A	S	S	Q	S	L	A	M	M	I	L	G	T	A	L	T	G	L	F	S	V	V	A	Q	I	L	V	P	L	A	A	T	L	A	S	P	D	K	R	G	K	V	V	G	T	I	M	S	G	L	L	L	G	I	L	L	A	R	T	V	A	G	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																							.	.																																																			.	.	.	.	.	.	.
Template Conservation																							.	.
Template Sequence		S	G	A	I	A	G	L	A	A	I	T	P	A	A	G	F	V	D	V	K	G	.	.	A	I	V	I	G	L	V	A	G	I	V	C	Y	L	A	M	D	F	R	I	K	K	K	I	D	E	S	L	D	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A
Template Known Secondary structure												T	T	T	T	T	T						.	.																						T	T				T	T																											S
Template Predicted Secondary structure																							.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
											156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	L	L	A	N	L	G	G	W	R	T	V	F	W	V	A	S	V	L	M	A	L	M	A	L	A	L	W	R	G	L	P	Q	M	K	S	E	T	H	L	N	Y	P	Q	L	L	G	S	V	F	S	M
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	L	F	G	N	P	Q	L	L	V	S	Q	L	I	A	V	A	S	T	T	A	Y	A	F	L	V	T	L	I	L	A	K	A	V	D	A	A	V	G	L	R	V	S	S	Q	E	E	Y	V	G	L	D	L	S	Q	H	E	E	V
Template Known Secondary structure			G	G	G	T																																		T		S	B
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions