Job Description P77735 Confidence 46.38% Date Thu Jan 5 12:32:17 GMT 2012 Rank 48 Aligned Residues 251 % Identity 16% Template c3noeA_ PDB info PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa Resolution 2.95 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.							.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Query Sequence		N	H	A	W	T	L	P	E	E	S	S	R	P	I	I	K	R	A	L	E	G	G	I	N	F	F	D	T	A	N	S	Y	S	D	G	S	S	E	.	.	.	.	.	.	E	I	V	G	R	A	L	R	D	F	A	R	R	E	D	V	V	V	A	T	K	V	F	H	R	V	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	Q	G	R	L	D	W	D	S	L	A	K	L	V	D	F	H	L	Q	D	G	T	N	A	I	V	A	V	G	T	T	G	E	S	A	T	L	D	V	E	E	H	I	Q	V	V	R	R	V	V	D	Q	V	K	G	R	I	P	V	I	A	G	T	G	A	N	S	T	R	E	A	V	A	L	T	E	A	A	K
Template Known Secondary structure			T	T	S		B																T		S					S	S	T	T	T	T	G	G	G																		T	T	S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
												94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	G	D	L	P	E	G	L	S	R	A	Q	I	L	R	S	I	D	D	S	L	R	R	L	G	M	D	Y	V	D	I	L	Q	I	H	R	W	D	Y	N	T	P	I	E	E	T	L	E	A	L	N	D	V	V	K	A	G	K	A	R	Y	I	G	A	S	S	M	H	A	S	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																									.	.	.													.
Template Conservation																																				.	.	.													.
Template Sequence		S	G	G	A	D	A	C	L	L	V	T	P	Y	Y	N	K	P	T	Q	E	G	M	Y	Q	H	F	R	H	I	A	E	A	V	A	.	.	.	I	P	Q	I	L	Y	N	V	P	G	R	T	.	S	C	D	M	L	P	E	T	V	E	R	L	S	K	V	P	N	I	I	G	I	K	E	A	T	G	D	L	Q	R
Template Known Secondary structure		T	T	T		S									S	S																		S		.	.	.	S												.	S													T	S	T	T								S
Template Predicted Secondary structure																																				.	.	.													.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	Q	A	L	E	L	Q	K	Q	H	G	W	A	Q	F	V	S	M	Q	D	H	Y	N	L	I	Y	R	E	E	E	R	E	M	L	P	L	C	Y	Q	E	G	V	A	V	I	P	W	S	P	L	A	R	G	R	L	T	R	P	W	G	E	T	T	A	R	L	V	S	D	E	V	G	K	N	L	Y	K	E	S
Query Conservation
Alig confidence												.	.	.	.								.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.								.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	E	V	I	E	R	V	G	K	.	.	.	.	D	F	L	V	Y	S	G	.	.	.	.	.	.	.	.	D	D	A	T	A	V	E	L	M	L	L	G	G	K	G	N	I	S	V	T	A	N	V	A	P	R	A	M	S	.	.	.	.	.	.	.	.	.	.	.	.	D	L	C	A	A	A	M	R	G	D
Template Known Secondary structure									S		T	.	.	.	.	T	S						.	.	.	.	.	.	.	.		T	T	T							T	T							S	G	G	G	T							.	.	.	.	.	.	.	.	.	.	.	.									T
Template Predicted Secondary structure												.	.	.	.								.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.									.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.													.	.	.	.	220	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	N	D	A	Q	I	A	E	R	L	T	G	V	S	E	E	L	G	A	T	R	A	Q	V	A	L	A	W	L	L	S	K	P	G	I	A	A	P	I	I	G	T	S	R	E	E	Q	L	D	E	L	L	N	A	V	D	I	T	L	K	P	E	Q	I	A	E	L	E	T	P	Y	K	P	H	P	V
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	A	A	R	A	I	N	D	R	L	M	P	L	H	K	A	L	F	I	E	S	N	P	I	P	V	K	W	A	L	H	E	M	G	L	I	P	E	.	.	.	.	.	.	.	.	.	.	.	.	G	I	R	L	P	L	T	W	L	S	P	H	C	H	D	P	L	R	Q	A	M	R	Q	T	G	V
Template Known Secondary structure																			T	T	S	S	S	S	S										T	T	S	S		S	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S					G	G	G											T	T	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.													.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions