Job Description P77735 Confidence 100.00% Date Thu Jan 5 12:32:17 GMT 2012 Rank 3 Aligned Residues 310 % Identity 31% Template c3lutA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2; PDBTitle: a structural model for the full-length shaker potassium channel kv1.2 Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		Y	N	P	L	G	K	T	D	L	R	V	S	R	L	C	L	G	C	M	T	F	G	E	P	D	R	G	N	H	A	W	T	L	P	E	E	S	S	R	P	I	I	K	R	A	L	E	G	G	I	N	F	F	D	T	A	N	S	Y	S	D	G	S	S	E	E	I	V	G	R	A	L	R	D	F	A	.	R	R	E
Query Conservation																																																																														.
Alig confidence																									.	.	.	.	.	.	.																																															.
Template Conservation																									.	.	.	.	.	.	.
Template Sequence		Y	R	N	L	G	K	S	G	L	R	V	S	C	L	G	L	G	T	W	V	T	F	G	.	.	.	.	.	.	.	G	Q	I	T	D	E	M	A	E	H	L	M	T	L	A	Y	D	N	G	I	N	L	F	D	T	A	E	V	Y	A	A	G	K	A	E	V	V	L	G	N	I	I	K	K	K	G	W	R	R	S
Template Known Secondary structure					S	T	T	S	S					S						T	T				.	.	.	.	.	.	.			S															T	T								T	T	G	G	G	G														T			G	G
Template Predicted Secondary structure																									.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.								.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		82	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		D	V	V	V	A	T	K	V	F	H	.	R	V	G	D	L	P	E	G	L	S	R	A	Q	I	L	R	S	I	D	D	S	L	R	R	L	G	M	D	Y	V	D	I	L	Q	I	H	R	W	D	Y	N	T	P	I	E	E	T	L	E	A	L	N	D	V	V	K	A	G	K	A	R	Y	I	G	A	S	S	M	H
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		S	L	V	I	T	T	K	I	F	W	G	G	K	A	E	T	E	R	G	L	S	R	K	H	I	I	E	G	L	K	A	S	L	E	R	L	Q	L	E	Y	V	D	V	V	F	A	N	R	P	D	P	N	T	P	M	E	E	T	V	R	A	M	T	H	V	I	N	Q	G	M	A	M	Y	W	G	T	S	R	W	S
Template Known Secondary structure		G								S	B			S	S	G	G	G	B	S	S																	T		S								S	S			T	T	S															T	T	S								S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																			.																																													.	.
Query SS confidence																																			.																																													.	.
Query Sequence		A	S	Q	F	A	Q	A	L	E	L	Q	K	Q	H	G	W	A	Q	F	V	S	M	Q	D	H	Y	N	L	I	Y	R	E	E	.	E	R	E	M	L	P	L	C	Y	Q	E	G	V	A	V	I	P	W	S	P	L	A	R	G	R	L	T	R	P	W	G	E	T	T	A	R	L	V	S	D	E	V	G	K	.	.
Query Conservation																																			.																																													.	.
Alig confidence																																			.																																													.	.
Template Conservation
Template Sequence		S	M	E	I	M	E	A	Y	S	V	A	R	Q	F	N	L	I	P	P	I	C	E	Q	A	E	Y	H	M	F	Q	R	E	K	V	E	V	Q	L	P	E	L	F	H	K	I	G	V	G	A	M	T	W	S	P	L	A	C	G	I	V	S	G	K	Y	D	S	G	I	P	P	Y	S	R	A	S	L	K	G	Y	Q
Template Known Secondary structure																T												B	T	T	B						T																		T	T	G	G	G	G	G	G	T	T	T	T	T	S			T	T	S	G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
						238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure		.	.	.	.																																																																	.	.
Query SS confidence		.	.	.	.																																																																	.	.
Query Sequence		.	.	.	.	N	L	Y	K	E	S	D	E	N	D	A	Q	I	A	E	R	L	T	G	V	S	E	E	L	G	A	T	R	A	Q	V	A	L	A	W	L	L	S	K	P	G	I	A	A	P	I	I	G	T	S	R	E	E	Q	L	D	E	L	L	N	A	V	D	I	.	.	T	L	K	P	E	Q	I	A	E	L
Query Conservation		.	.	.	.																																																																	.	.
Alig confidence		.	.	.	.																																																																	.	.
Template Conservation
Template Sequence		W	L	K	D	K	I	L	S	E	E	G	R	R	Q	Q	A	K	L	K	E	L	Q	A	I	A	E	R	L	G	C	T	L	P	Q	L	A	I	A	W	C	L	R	N	E	G	V	S	S	V	L	L	G	A	S	N	A	E	Q	L	M	E	N	I	G	A	I	Q	V	L	P	K	L	S	S	S	I	V	H	E	I
Template Known Secondary structure								T	S																				T	T	S												T	S	T	T									S	S									T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		312	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	P	Y	K	P	H	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	I	L	G	N	K	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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