Job Description P77735 Confidence 28.19% Date Thu Jan 5 12:32:17 GMT 2012 Rank 65 Aligned Residues 240 % Identity 15% Template c3lerA_ PDB info PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168 Resolution 1.84 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.						.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																					.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	T	L	P	E	E	S	S	R	P	I	I	K	R	A	L	E	G	G	I	N	F	F	D	T	A	N	S	Y	S	D	G	S	S	E	.	.	.	.	.	E	I	V	G	R	A	L	R	D	F	A	R	R	E	D	V	V	V	A	T	K	V	F	H	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	V	D	E	Q	S	Y	A	R	L	I	K	R	Q	I	E	N	G	I	D	A	V	V	P	V	G	T	T	G	E	S	A	T	L	T	H	E	E	H	R	T	C	I	E	I	A	V	E	T	C	K	G	T	K	V	K	V	L	A	G	A	G	S	N	A	T	H	E	A	V	G	L	A	K	F	A	K	E	H
Template Known Secondary structure		T																T	T	T						T	T	S	T	T	T	T	G	G	G	S																	T	T	S	S										S	S														T
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
										94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	G	D	L	P	E	G	L	S	R	A	Q	I	L	R	S	I	D	D	S	L	R	R	L	G	M	D	Y	V	D	I	L	Q	I	H	R	W	D	Y	N	T	P	I	E	E	T	L	E	A	L	N	D	V	V	K	A	G	K	A	R	Y	I	G	A	S	S	M	H	A	S	Q	F	A
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																									.	.	.													.
Template Conservation																																		.	.	.													.
Template Sequence		G	A	D	G	I	L	S	V	A	P	Y	Y	N	K	P	T	Q	Q	G	L	Y	E	H	Y	K	A	I	A	Q	S	V	D	.	.	.	I	P	V	L	L	Y	N	V	P	G	R	T	.	G	C	E	I	S	T	D	T	I	I	K	L	F	R	D	C	E	N	I	Y	G	V	E	A	S	G	N	I	D	K	C	V
Template Known Secondary structure		T		S									S	S																			S	.	.	.	S												.	S																T	T							S	S
Template Predicted Secondary structure																																		.	.	.													.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	L	E	L	Q	K	Q	H	G	W	A	Q	F	V	S	M	Q	D	H	Y	N	L	I	Y	R	E	E	E	R	E	M	L	P	L	C	Y	Q	E	G	V	A	V	I	P	W	S	P	L	A	R	G	R	L	T	R	P	W	G	E	T	T	A	R	L	V	S	D	E	V	G	K	N	L	Y	K	E	S	D	E
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	L	A	H	E	P	R	X	X	L	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	D	A	I	N	Y	P	I	L	S	N	G	G	K	G	V	I	S	V	T	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	S	B				.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G							T	T							S	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.															190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300												.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	D	A	Q	I	A	E	R	L	T	G	V	S	E	E	L	G	A	T	R	A	Q	V	A	L	A	W	L	L	S	K	P	G	I	A	A	P	I	I	G	T	S	R	E	E	Q	L	D	E	L	L	N	A	V	D	.	.	.	.	.	.	.	.	.	.	.	I	T	L	K	P	E	Q	I	A	E	L	E	T	P
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.										.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.										.	.
Template Sequence		L	L	P	D	X	I	S	A	L	T	H	F	A	L	D	E	N	Y	K	E	A	K	.	K	I	N	D	E	L	Y	N	I	.	.	N	K	I	L	F	C	E	S	N	P	I	P	I	K	T	A	X	Y	L	A	G	L	I	E	S	L	E	F	R	L	P	L	C	S	P	S	K	E	N	F	A	K	I	E	E	V
Template Known Secondary structure		T														T	T							.						T				.	.				T	T	S	S	S	T	T										T	T	S	S	S						T	T
Template Predicted Secondary structure																								.										.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	P	H	P	V	V	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	K	K	Y	K	I	K	G	F
Template Known Secondary structure			T	T	S
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions