Job Description P43341 Confidence 99.87% Date Thu Jan 5 12:02:20 GMT 2012 Rank 10 Aligned Residues 222 % Identity 18% Template c3qg5D_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:mre11; PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair Resolution 3.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.											.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.															.
Query SS confidence														.	.	.	.	.	.	.	.	.	.															.
Query Sequence		M	A	T	L	F	I	A	D	L	H	L	C	.	.	.	.	.	.	.	.	.	.	V	E	E	P	A	I	T	A	G	F	L	R	F	L	.	A	G	E	A	R	K	A	D	A	L	Y	I	L	G	D	L	F	E	A	W	I	G	D	D	D	P	N	P	L	H	R	K	M	A	A	A	I	K	A	V	S	D	S
Query Conservation														.	.	.	.	.	.	.	.	.	.															.
Alig confidence														.	.	.	.	.	.	.	.	.	.															.																											.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		X	K	I	L	H	T	S	D	W	H	L	G	V	T	S	W	T	S	S	R	P	V	D	R	R	E	E	L	K	K	A	L	D	K	V	V	E	E	A	E	K	R	E	V	D	L	I	L	L	T	G	D	L	L	H	S	R	N	N	P	S	V	V	.	.	.	A	L	H	D	L	L	D	Y	L	K	R	X	X	R
Template Known Secondary structure												B	T					T	T	T	S				T																		T	T		S								S	B	S		S	S						.	.	.														T
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.									.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.
Query Sequence		G	V	P	C	Y	F	I	H	G	N	R	D	F	L	L	G	K	R	F	A	R	E	S	.	.	.	.	.	.	.	.	G	M	T	L	L	P	E	E	K	V	L	E	L	Y	G	R	R	V	L	I	M	H	G	D	T	L	C	T	D	D	A	G	Y	Q	A	F	R	A	K	V	H	K	P	W	L	Q	T	L	F
Query Conservation																									.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	P	V	V	V	L	P	G	N	H	D	W	K	G	L	K	L	F	G	N	F	V	T	S	I	S	S	D	I	T	F	V	X	S	F	E	P	V	D	V	E	A	K	R	G	Q	K	V	R	I	L	P	F	P	Y	P	D	E	S	E	A	L	R	K	N	E	G	D	F	R	F	F	L	E	S	R	L	N	K
Template Known Secondary structure		T	S								S			S	T	T													S	S						S	S	S							T	T														S									T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.
Query SS confidence																																																																	.	.	.
Query Sequence		L	A	L	P	L	F	V	R	K	R	I	A	A	R	M	R	A	N	S	K	E	A	N	S	S	K	S	L	A	I	M	D	V	N	Q	N	A	V	V	S	A	M	E	K	H	Q	V	Q	W	L	I	H	G	H	T	H	R	P	A	V	H	E	L	.	.	.	I	A	N	Q	Q	P	A	F	R	V	V	L	G	A
Query Conservation																																																																	.	.	.
Alig confidence																																				.	.	.	.	.	.	.																							.	.	.
Template Conservation																																				.	.	.	.	.	.	.
Template Sequence		L	Y	E	E	A	L	K	K	E	D	F	A	I	F	X	G	H	F	T	V	E	G	L	A	G	Y	R	E	I	I	I	N	R	A	.	.	.	.	.	.	.	L	I	P	S	V	V	D	Y	A	A	L	G	H	I	H	S	F	R	E	I	Q	K	Q	P	L	T	I	Y	P	G	S	L	I	R	I	D	F	G	E
Template Known Secondary structure								T		S	S								S			T	T	S										G	G	.	.	.	.	.	.	.	G	S		S	S		S						S		S	S							T	T								S	S			S	G	G	G
Template Predicted Secondary structure																																				.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.								.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	H	T	E	G	S	M	V	K	V	T	A	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	D	E	K	G	A	V	F	V	E	L	K	R
Template Known Secondary structure		T	T												S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions