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Job DescriptionP43341
Confidence99.13%DateThu Jan 5 12:02:20 GMT 2012
Rank41Aligned Residues220
% Identity16%Templatec3ivdA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:nucleotidase; PDBTitle: putative 5'-nucleotidase (c4898) from escherichia coli in2 complex with uridine
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10. ........20.........30. ....... .40.........50.........60.......
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Query Sequence  ATLFIADLHL. . . . . . . . . . . . CVEEPAITAGFLRFLAGEAR. KADALYI. LGDLFEAWIGDDDPNPLHRKMAAAIKAVS
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Template Sequence  TIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKNKATWFFDAGDYFTGP. . . . . YISSLTKGKAIIDIXN
Template Known Secondary structure 


TT

S
B

TTSGGGTS
B


SS
S

SSSS.....TTTTT
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   26...30.........40.........50.........60.........70.........80.... .....90.........100
 
   68.70.........80...... ...90.........100.........110....... ..120...
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Query Sequence  DSGVPCYFIHGNRDFLLGK. . . . . . . . . . . . . . . . . . . RFARESGMTLLPEEKVLELYGRRVLIMHGDT. . . . . LCTDDA
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Template Sequence  TXPFDAVTI. GNHEFDHGWDNTLLQLSQAKFPIVQGNIFYQNSSKSFWDKPYTIIEKDGVKIGVIGLHGVFAFNDTVSAA
Template Known Secondary structure  TS

S

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GGGGTT
TT
SS
B


STTSS
BSSS
STT
S
GG
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   101........ 110.........120.........130.........140.........150.........160.........170.........
 
   124.....130.........140.........150.........160.........170.........180.........190.........200...
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Query Sequence  GYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHE
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Template Sequence  TRVGIEARDEIKWLQRYIDELKGKVDLTVALIHEGVPARQSSXGGTDVRRALDKDIQTASQVKGLDILITGHAHVGTPEP
Template Known Secondary structure  GSTT

TTT
S
SS




SSGGGSS




SS

SS



SS
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   180.........190.........200.........210.........220.........230.........240.........250.........
 
   204.....210.........220.........
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Query Sequence  LIANQQPAFRVVLGAWHTEGSMVKVT
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Template Sequence  IKVG. . NTLILSTDSGGIDVGKLVLD
Template Known Secondary structure  T..T


STTS
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   260... ......270.........280...
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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