Job Description P43341 Confidence 99.06% Date Thu Jan 5 12:02:20 GMT 2012 Rank 44 Aligned Residues 211 % Identity 16% Template c3e0jG_ PDB info PDB header:transferase Chain: G: PDB Molecule:dna polymerase subunit delta-2; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.										.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.											.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence																	.	.	.											.	.	.	.	.	.	.	.	.																										.	.
Query Sequence		A	T	L	F	I	A	D	L	H	L	C	V	E	E	P	.	.	.	A	I	T	A	G	F	L	R	F	L	.	.	.	.	.	.	.	.	.	A	G	E	A	R	K	A	D	A	L	Y	I	L	G	D	L	F	E	A	W	I	G	D	D	D	.	.	P	N	P	L	H	R	K	M	A	A	A	I	K	A	V	S
Query Conservation																	.	.	.											.	.	.	.	.	.	.	.	.																										.	.
Alig confidence																	.	.	.											.	.	.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		F	V	L	L	V	S	G	L	G	L	G	G	G	G	G	E	S	L	L	G	T	Q	L	L	V	D	V	V	T	G	Q	L	G	D	E	G	E	Q	C	S	A	A	H	V	S	R	V	I	L	A	G	N	L	L	S	H	L	T	K	K	T	Q	A	A	S	V	E	A	V	K	M	L	D	E	I	L	L	Q	L	S
Template Known Secondary structure											B	T	S	S																	T	S	S	S									T	T								S		S	B
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.													.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	G	V	P	C	Y	F	I	H	G	N	R	D	F	L	L	G	K	R	F	A	R	E	S	G	M	T	L	.	.	.	.	.	.	.	.	.	.	.	.	L	P	E	E	K	V	L	E	L	Y	G	R	R	V	L	I	M	H	G	D	T	L	C	T	D	D	A	G	Y	Q	A	F	R	A	K	V	H	K	P
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																											.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation				.																																																																		.	.	.
Template Sequence		A	S	.	V	P	V	D	V	M	P	G	E	F	D	P	T	N	Y	T	L	P	Q	Q	P	L	H	P	C	M	F	P	L	A	T	A	Y	S	T	L	Q	L	V	T	N	P	Y	Q	A	T	I	D	G	V	R	F	L	G	T	S	G	Q	N	V	S	D	I	F	R	.	.	.	Y	S	S	M	E	D	H	L	E
Template Known Secondary structure				.	S								T	T	S	S	S		S	S	S	S						G	G	G						T	S	T	T						S	S						T	T							S	S									.	.	.		S
Template Predicted Secondary structure				.																																																																		.	.	.
Template SS confidence
		288	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		W	L	Q	T	L	F	L	A	L	P	L	F	V	R	K	R	I	A	A	R	M	R	A	N	S	K	E	A	N	S	S	K	S	L	A	I	M	D	V	N	Q	N	A	V	V	S	A	M	E	K	H	Q	V	Q	W	L	I	H	G	H	T	H	R	P	A	V	H	E	L	I	A	.	N	Q	Q	P	A	F	R	V
Query Conservation																																																																									.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	E	W	T	L	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	R	H	I	S	P	T	A	P	D	T	K	T	D	P	F	I	F	P	.	.	.	.	.	.	.	.	.	.	.	E	C	P	H	V	Y	F	C	G	N	T	P	S	F	G	S	K	I	I	R	G	P	E	D	Q	T	V	L	L	V
Template Known Secondary structure									B	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S		T	T	S							T	T	S		S	.	.	.	.	.	.	.	.	.	.	.	S			S								S	S									S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.														.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.												390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	G	A	W	H	T	E	G	S	M	V	K	V	T	A	D	D	V	E	L	I	H	F	P	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	P	D	F	S	A	T	Q	T	A	C	L	V	N	L	R	S	L	A	C	Q	P	I	S	F
Template Known Secondary structure																	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions